GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
DUF161 - Uncharacterized BCR YitT family COG1284
Pfam: PF02588 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 82
Sequences: 4658
Seq/Len: 56.8
HH_delta: 0.879 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
6_I73_I1.455613.944
13_G81_F0.923322.502
43_S46_T0.772312.092
60_F65_F0.753132.040
49_F79_S0.743682.015
10_L81_F0.740872.007
76_F80_I0.69331.878
57_I61_I0.682351.849
29_T51_I0.658661.785
12_M78_V0.643071.742
14_I18_L0.603921.636
5_I9_G0.599441.624
50_I54_P0.582891.579
9_G77_L0.573251.553
45_G79_S0.56091.520
36_L40_F0.551.490
33_A48_I0.533851.446
36_L47_I0.527651.430
64_G67_S0.524861.422
19_F24_L0.508351.377
13_G17_S0.468361.269
53_I57_I0.466921.265
34_L38_K0.46641.264
29_T55_V0.464661.259
60_F68_F0.451951.224
42_I47_I0.440371.193
66_P70_G0.440281.193
2_F70_G0.439841.192
46_T49_F0.434621.178
29_T52_N0.433831.175
42_I46_T0.429861.165
35_I39_K0.429081.163
25_S34_L0.42651.156
17_S21_K0.424471.150
56_L75_I0.421751.143
46_T50_I0.420871.140
32_L36_L0.403861.094
2_F73_I0.40171.088
54_P58_I0.386541.047
75_I79_S0.379721.029
63_L67_S0.377731.023
7_I69_I0.377151.022
54_P57_I0.374631.015
8_G12_M0.369761.002
60_F63_L0.353360.957
59_G63_L0.352090.954
9_G28_G0.342330.927
34_L37_S0.340760.923
3_L7_I0.332620.901
9_G13_G0.331370.898
5_I74_Y0.325590.882
56_L59_G0.324090.878
47_I50_I0.323780.877
5_I73_I0.32330.876
16_I19_F0.32310.875
6_I77_L0.320160.867
14_I17_S0.310970.843
37_S41_N0.309230.838
10_L14_I0.301860.818
37_S44_I0.300880.815
58_I62_I0.299020.810
37_S47_I0.297230.805
62_I75_I0.296750.804
52_N75_I0.294780.799
49_F53_I0.29390.796
73_I77_L0.293080.794
74_Y78_V0.287430.779
37_S40_F0.286030.775
4_A18_L0.28490.772
20_L34_L0.284720.771
39_K54_P0.282910.766
5_I13_G0.282480.765
9_G81_F0.279580.757
58_I61_I0.278410.754
20_L26_T0.27810.753
50_I53_I0.277880.753
32_L35_I0.273910.742
9_G17_S0.273730.742
52_N56_L0.272840.739
75_I78_V0.26780.726
20_L30_D0.263690.714
11_I16_I0.258510.700
16_I30_D0.258480.700
42_I50_I0.257640.698
26_T30_D0.25670.695
33_A47_I0.25530.692
56_L71_T0.254350.689
68_F71_T0.253680.687
27_G32_L0.252470.684
31_G35_I0.249530.676
7_I11_I0.248430.673
45_G49_F0.248270.673
9_G78_V0.247870.672
16_I48_I0.246590.668
40_F47_I0.246180.667
33_A51_I0.244510.662
34_L52_N0.242420.657
12_M20_L0.241830.655
44_I47_I0.241630.655
19_F26_T0.240890.653
47_I51_I0.240580.652
44_I48_I0.238950.647
17_S26_T0.238370.646
67_S79_S0.236360.640
68_F79_S0.236330.640
34_L44_I0.233490.633
49_F52_N0.23260.630
61_I66_P0.231990.629
4_A9_G0.231830.628
66_P72_I0.231110.626
64_G68_F0.230840.625
12_M34_L0.229910.623
27_G30_D0.228940.620
4_A8_G0.228050.618
36_L51_I0.226890.615
69_I72_I0.226090.613
46_T53_I0.225950.612
56_L72_I0.224060.607
5_I70_G0.223620.606
43_S80_I0.223580.606
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
2qi9A0.68291.70.879
3m73A0.81711.60.881
2nwlA0.92681.40.884
1spfA0.17070.90.897
3b8eG0.30490.90.897
3n2fG0.25610.70.905
4hzuS0.75610.60.908
3s8fC0.23170.50.913
2nq2A0.73170.50.913
3tijA0.96340.50.913
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

Page generated in 0.1176 seconds.