GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
DUF204 - Domain of unknown function DUF
Pfam: PF02659 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Clan: CL0292
Length: 67
Sequences: 1530
Seq/Len: 22.84
HH_delta: 0.864 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
61_I65_F0.444181.999
33_Q37_P0.363251.635
43_L47_L0.334561.505
9_G60_G0.331421.491
55_A59_G0.329741.484
28_I32_F0.321611.447
4_D8_V0.296731.335
32_F37_P0.29371.322
5_A37_P0.291071.310
54_Y66_I0.286831.291
2_S33_Q0.267241.203
27_L31_I0.262681.182
60_G64_I0.261871.178
48_G52_G0.25721.157
23_L27_L0.253041.139
42_L46_R0.250091.125
25_I28_I0.249481.123
29_I33_Q0.249281.122
8_V11_S0.248731.119
48_G53_S0.244931.102
1_L13_G0.24411.098
35_I39_L0.239051.076
36_M47_L0.238021.071
9_G22_I0.236011.062
14_L34_F0.235391.059
36_M40_G0.23471.056
57_W61_I0.231281.041
57_W62_I0.22831.027
7_A36_M0.226971.021
11_S14_L0.223981.008
53_S57_W0.223931.008
64_I67_G0.222811.003
51_I55_A0.222131.000
18_S25_I0.220640.993
46_R49_R0.220370.992
16_G38_L0.219970.990
8_V47_L0.218990.985
1_L33_Q0.21760.979
23_L28_I0.214680.966
54_Y57_W0.214470.965
9_G44_G0.214180.964
11_S26_A0.212490.956
6_F29_I0.212470.956
6_F13_G0.211590.952
6_F10_I0.210250.946
32_F36_M0.208330.937
30_G38_L0.207770.935
50_F53_S0.206640.930
13_G16_G0.205970.927
15_R66_I0.205830.926
1_L7_A0.20540.924
43_L46_R0.205060.923
52_G55_A0.204740.921
42_L61_I0.204330.919
15_R25_I0.203970.918
18_S43_L0.203410.915
5_A26_A0.20330.915
31_I50_F0.202950.913
6_F37_P0.202630.912
12_Y48_G0.201040.905
56_E62_I0.200820.904
49_R53_S0.200370.902
5_A30_G0.199970.900
31_I35_I0.199690.899
50_F54_Y0.199640.898
8_V59_G0.199280.897
46_R65_F0.198310.892
2_S5_A0.198090.891
12_Y15_R0.197850.890
7_A60_G0.197680.890
25_I29_I0.196230.883
63_L67_G0.193450.870
63_L66_I0.192220.865
39_L42_L0.191630.862
33_Q40_G0.190110.855
5_A32_F0.19010.855
9_G33_Q0.190060.855
10_I18_S0.190050.855
1_L32_F0.189120.851
55_A64_I0.188290.847
3_I37_P0.187580.844
13_G26_A0.186650.840
33_Q36_M0.18660.840
26_A37_P0.18660.840
3_I7_A0.186160.838
31_I34_F0.185980.837
8_V29_I0.185010.833
2_S29_I0.183230.825
35_I53_S0.181860.818
1_L44_G0.181270.816
27_L49_R0.181170.815
24_L42_L0.180510.812
45_R48_G0.179320.807
45_R49_R0.179220.806
30_G37_P0.17920.806
1_L37_P0.177480.799
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
4j05A0.98513.70.864
2lvhA0.31342.90.871
1ciiA0.76122.60.874
3o7qA0.940320.88
2a65A0.895520.881
1vf5F0.52241.90.882
1pw4A0.98511.70.885
3tx3A11.60.886
2i68A0.89551.60.887
3tijA0.98511.40.89
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

Page generated in 0.2913 seconds.