GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
G3P_acyltransf - Glycerol-3-phosphate acyltransferase
Pfam: PF02660 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 178
Sequences: 1554
Seq/Len: 8.73
HH_delta: 0.958 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
11_F52_L0.682583.828
12_A32_P0.651693.655
136_I167_I0.482842.708
125_L134_A0.463752.601
130_Y177_L0.449332.520
78_G105_V0.427412.397
38_F46_G0.415842.332
10_P91_L0.412022.311
58_F108_A0.39752.229
83_L87_F0.376862.113
124_L137_I0.372572.089
57_G101_T0.355291.992
50_L54_I0.343881.928
8_S90_F0.339321.903
23_D26_K0.333381.870
4_Y89_I0.32851.842
10_P32_P0.325771.827
27_V40_V0.319771.793
131_V135_S0.312721.754
22_V27_V0.307321.723
6_L60_A0.298861.676
175_K178_L0.297821.670
82_V102_S0.296561.663
86_N98_G0.295561.657
88_P91_L0.293561.646
55_L58_F0.292661.641
14_I18_I0.284531.596
120_V145_L0.28031.572
133_L137_I0.27911.565
34_A100_A0.275931.547
15_I45_W0.274131.537
60_A77_A0.269211.510
121_F131_V0.26791.502
168_Y171_R0.265081.487
99_V166_I0.26471.484
126_L129_R0.262191.470
13_Y91_L0.253541.422
15_I52_L0.251221.409
34_A50_L0.247121.386
12_A49_V0.243471.365
35_T132_S0.243291.364
172_E176_R0.242931.362
16_G41_L0.232231.302
16_G22_V0.22781.277
16_G37_A0.222611.248
82_V86_N0.222381.247
128_T134_A0.221261.241
48_L52_L0.218251.224
121_F134_A0.218131.223
15_I48_L0.217011.217
86_N166_I0.215291.207
9_I14_I0.207881.166
35_T39_R0.207481.164
32_P91_L0.206621.159
3_G80_A0.206431.158
102_S162_L0.202841.137
44_K48_L0.202061.133
8_S89_I0.201331.129
132_S177_L0.200511.124
43_K47_I0.197251.106
58_F62_L0.196191.100
21_G42_G0.194071.088
139_F163_A0.194041.088
32_P88_P0.191181.072
86_N169_R0.191091.072
136_I174_I0.19071.069
12_A91_L0.189571.063
29_S39_R0.189321.062
3_G77_A0.189091.060
13_Y25_R0.188731.058
153_L157_L0.188681.058
115_L119_A0.188351.056
16_G24_I0.187451.051
57_G105_V0.18651.046
124_L133_L0.18621.044
128_T133_L0.185181.038
32_P98_G0.184461.034
22_V41_L0.183461.029
35_T131_V0.182761.025
50_L100_A0.180171.010
139_F166_I0.179981.009
103_L114_A0.179521.007
147_W156_V0.179421.006
13_Y32_P0.178821.003
37_A46_G0.178531.001
120_V141_I0.178421.001
100_A104_G0.178271.000
62_L65_R0.178170.999
82_V162_L0.1780.998
102_S138_A0.177340.994
37_A49_V0.177270.994
53_D85_H0.176450.990
110_S113_L0.176220.988
132_S135_S0.176160.988
16_G27_V0.175520.984
140_I167_I0.17540.984
19_F45_W0.173720.974
25_R88_P0.172740.969
24_I32_P0.172150.965
29_S35_T0.172030.965
170_H173_N0.170570.957
143_P163_A0.168570.945
21_G41_L0.167680.940
117_A142_L0.167350.938
80_A83_L0.16720.938
132_S176_R0.166480.934
158_F162_L0.165840.930
130_Y134_A0.165730.929
6_L57_G0.164790.924
3_G57_G0.164150.921
143_P147_W0.164020.920
38_F47_I0.16190.908
99_V135_S0.161340.905
37_A41_L0.16130.905
54_I107_L0.160950.903
3_G6_L0.160890.902
135_S170_H0.160860.902
124_L134_A0.160680.901
78_G81_A0.16050.900
5_L8_S0.160450.900
29_S135_S0.156780.879
41_L49_V0.156490.878
24_I40_V0.15510.870
122_L126_L0.15510.870
35_T173_N0.152560.856
130_Y133_L0.152430.855
132_S173_N0.151980.852
171_R175_K0.151060.847
57_G104_G0.15030.843
4_Y88_P0.150180.842
102_S166_I0.149770.840
54_I125_L0.149460.838
39_R132_S0.149310.837
142_L159_A0.149180.837
61_V77_A0.149130.836
79_L161_I0.148310.832
164_L168_Y0.148170.831
15_I20_G0.148110.831
55_L59_L0.147820.829
49_V52_L0.147490.827
10_P13_Y0.147290.826
47_I51_L0.146850.824
123_I127_I0.146760.823
124_L128_T0.145520.816
42_G45_W0.14490.813
102_S117_A0.144640.811
20_G45_W0.144330.809
107_L118_L0.143110.803
31_N36_N0.1430.802
10_P90_F0.142030.796
97_K170_H0.141460.793
35_T135_S0.139770.784
13_Y16_G0.139710.783
25_R91_L0.139090.780
64_A73_W0.13880.778
3_G64_A0.138620.777
125_L136_I0.138240.775
156_V160_I0.138240.775
33_G36_N0.137790.773
146_A156_V0.137480.771
143_P156_V0.137090.769
29_S132_S0.136310.764
173_N176_R0.136290.764
121_F138_A0.136190.764
108_A111_P0.135940.762
29_S170_H0.135880.762
59_L66_F0.135860.762
120_V137_I0.135730.761
13_Y24_I0.134860.756
99_V170_H0.13390.751
39_R135_S0.133590.749
116_I145_L0.133310.748
135_S173_N0.132950.746
172_E178_L0.132830.745
121_F135_S0.132740.744
107_L114_A0.13210.741
60_A81_A0.13170.739
24_I37_A0.131520.738
172_E175_K0.131490.737
2_I6_L0.131140.735
54_I58_F0.130950.734
12_A31_N0.130910.734
86_N102_S0.13090.734
8_S81_A0.130780.733
36_N96_G0.130780.733
46_G100_A0.130670.733
51_L58_F0.130450.732
37_A91_L0.130440.731
88_P165_L0.130240.730
16_G40_V0.130020.729
59_L143_P0.129670.727
45_W48_L0.129430.726
15_I123_I0.129180.724
32_P90_F0.128920.723
141_I156_V0.128620.721
52_L166_I0.127740.716
71_P74_L0.127670.716
38_F45_W0.127470.715
38_F125_L0.127390.714
125_L131_V0.127040.712
38_F50_L0.126750.711
163_A167_I0.126740.711
6_L59_L0.126510.709
86_N165_L0.126060.707
12_A24_I0.126010.707
123_I126_L0.125950.706
157_L160_I0.125870.706
125_L129_R0.125370.703
19_F48_L0.123860.695
29_S97_K0.123420.692
15_I19_F0.123320.692
41_L131_V0.123010.690
36_N85_H0.122840.689
160_I164_L0.122640.688
98_G163_A0.122520.687
35_T177_L0.121930.684
105_V162_L0.121240.680
29_S99_V0.120180.674
62_L108_A0.118530.665
123_I129_R0.11840.664
39_R173_N0.118240.663
9_I80_A0.117970.662
53_D56_K0.117160.657
45_W52_L0.117050.656
121_F125_L0.116850.655
137_I141_I0.116670.654
107_L111_P0.116340.652
34_A49_V0.116110.651
43_K51_L0.115950.650
83_L165_L0.11590.650
2_I127_I0.11580.649
60_A64_A0.115570.648
60_A90_F0.115340.647
36_N95_G0.115190.646
133_L177_L0.11510.645
58_F65_R0.114670.643
24_I30_G0.114260.641
82_V98_G0.114230.641
77_A80_A0.113930.639
65_R161_I0.113790.638
36_N53_D0.113790.638
18_I145_L0.113730.638
156_V159_A0.113710.638
136_I139_F0.113560.637
34_A46_G0.112950.633
16_G42_G0.112950.633
44_K126_L0.112690.632
57_G64_A0.112680.632
24_I86_N0.112580.631
113_L147_W0.112070.628
87_F91_L0.11170.626
103_L138_A0.110890.622
64_A158_F0.110830.622
22_V26_K0.110750.621
165_L169_R0.110650.621
51_L141_I0.110630.620
149_W155_Y0.110340.619
97_K100_A0.110330.619
56_K85_H0.110330.619
152_S155_Y0.110130.618
82_V158_F0.110060.617
28_G101_T0.109260.613
30_G40_V0.109070.612
112_W115_L0.108950.611
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
4dveA0.43826.80.958
2j5dA0.25282.50.965
1mqsA0.29781.80.968
3tu8A0.33151.80.968
2voyD0.14611.50.969
1gff30.14611.30.97
3bz1X0.28091.30.97
3rceA0.91571.20.97
4j05A0.80341.20.971
1otsA0.96631.10.971
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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