GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
Na_Pi_cotrans - NaPi-cotransporter
Pfam: PF02690 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 142
Sequences: 1990
Seq/Len: 14.01
HH_delta: 0.932 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
56_V73_I0.57532.952
7_R11_S0.406962.088
101_H105_N0.406652.087
81_T84_T0.402732.066
86_L102_L0.399732.051
52_V77_A0.395212.028
31_N34_L0.388721.995
86_L89_A0.371171.905
36_F79_I0.35551.824
30_S34_L0.351911.806
53_T74_I0.348781.790
36_F113_L0.346281.777
66_S69_Q0.337751.733
53_T57_V0.283841.456
43_T52_V0.281971.447
44_A83_I0.277971.426
42_L46_V0.266441.367
75_L109_V0.260141.335
4_F8_L0.25931.330
43_T46_V0.257711.322
43_T84_T0.257441.321
47_Q50_S0.256491.316
88_A101_H0.25191.293
110_L114_P0.251421.290
109_V114_P0.250981.288
20_R23_A0.250711.286
86_L95_F0.240881.236
36_F40_A0.239141.227
57_V60_V0.237141.217
19_P23_A0.23251.193
22_R58_S0.230831.184
37_L41_L0.228811.174
49_S78_N0.227551.168
33_L36_F0.22011.129
49_S81_T0.219931.128
107_I110_L0.215931.108
56_V65_L0.211581.086
58_S62_A0.208891.072
96_R100_V0.208761.071
60_V70_A0.207841.066
29_T65_L0.206291.058
79_I109_V0.205161.053
19_P106_L0.205111.052
46_V81_T0.205091.052
20_R107_I0.204651.050
53_T77_A0.20451.049
58_S61_A0.203291.043
71_L75_L0.202621.040
49_S84_T0.202551.039
40_A79_I0.201441.034
32_P35_A0.200031.026
1_L50_S0.197531.014
23_A27_R0.19731.012
109_V113_L0.195081.001
109_V112_F0.194841.000
37_L40_A0.193810.994
106_L109_V0.192470.988
63_G66_S0.192460.988
102_L106_L0.192390.987
6_L59_L0.19070.979
43_T49_S0.190190.976
84_T88_A0.188960.970
9_L57_V0.185470.952
32_P72_A0.185430.951
13_L17_A0.183590.942
40_A83_I0.183120.940
97_L100_V0.18210.934
33_L37_L0.18140.931
62_A66_S0.180950.928
30_S33_L0.180810.928
43_T76_G0.179790.923
29_T59_L0.179360.920
44_A82_T0.178740.917
54_L79_I0.177730.912
107_I111_L0.176280.905
78_N84_T0.174470.895
47_Q87_L0.174310.894
10_S14_K0.171740.881
6_L113_L0.171480.880
56_V77_A0.168520.865
59_L64_V0.168140.863
41_L68_E0.167970.862
7_R28_L0.167230.858
25_L65_L0.166980.857
5_G9_L0.16580.851
2_F5_G0.164780.846
101_H104_F0.164770.845
78_N85_A0.164420.844
106_L110_L0.164120.842
5_G47_Q0.163830.841
55_I59_L0.162750.835
46_V77_A0.161850.830
25_L75_L0.161720.830
47_Q83_I0.16170.830
96_R102_L0.16160.829
83_I86_L0.161370.828
77_A82_T0.161350.828
85_A96_R0.160780.825
99_L107_I0.160290.822
64_V111_L0.160030.821
42_L52_V0.158990.816
9_L17_A0.15860.814
21_L54_L0.158570.814
59_L82_T0.158530.813
72_A82_T0.157990.811
74_I78_N0.157830.810
75_L88_A0.157230.807
103_L106_L0.157190.807
35_A72_A0.157070.806
39_G47_Q0.15690.805
19_P22_R0.15650.803
67_L70_A0.156450.803
96_R99_L0.156210.802
6_L75_L0.155930.800
14_K17_A0.155280.797
22_R59_L0.154660.794
74_I77_A0.15420.791
17_A53_T0.154170.791
32_P57_V0.154150.791
25_L108_G0.153420.787
68_E107_I0.153310.787
60_V100_V0.152990.785
105_N112_F0.152920.785
82_T86_L0.152860.784
29_T62_A0.152130.781
9_L46_V0.151570.778
36_F75_L0.150310.771
35_A73_I0.149690.768
98_A101_H0.149560.767
11_S14_K0.149470.767
104_F107_I0.149270.766
3_L6_L0.148110.760
2_F112_F0.147570.757
61_A72_A0.147370.756
10_S61_A0.147240.756
95_F99_L0.147070.755
23_A26_A0.146540.752
10_S51_A0.145750.748
30_S41_L0.145640.747
34_L110_L0.145370.746
59_L108_G0.145080.744
38_L73_I0.144970.744
2_F62_A0.144490.741
6_L58_S0.144330.741
98_A105_N0.144140.740
82_T102_L0.143890.738
22_R97_L0.143040.734
67_L74_I0.142320.730
12_G16_L0.14190.728
10_S13_L0.141810.728
55_I86_L0.141410.726
22_R26_A0.140920.723
81_T101_H0.140380.720
52_V85_A0.140250.720
37_L44_A0.139920.718
6_L54_L0.13860.711
11_S112_F0.138510.711
22_R64_V0.137590.706
42_L55_I0.137150.704
37_L95_F0.136980.703
25_L77_A0.136160.699
9_L82_T0.135980.698
59_L86_L0.135950.698
85_A108_G0.135340.694
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3k3fA0.85218.80.932
4f35D0.8383.40.943
3zojA0.97892.70.946
3tijA0.36622.40.947
3qfuA0.3382.30.947
3qe7A0.85921.80.95
3i33A0.35211.40.953
3j1zP0.78871.20.955
3qvsA0.457710.957
3arcJ0.098610.957
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

Page generated in 0.0344 seconds.