GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
MtN3_slv - Sugar efflux transporter for intercellular exchange
Pfam: PF03083 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Clan: CL0141
Length: 87
Sequences: 2574
Seq/Len: 29.59
HH_delta: 0.859 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
23_R27_K0.798113.026
77_V81_I0.582072.207
46_C68_G0.460231.745
30_S33_S0.456871.732
49_W53_G0.449131.703
29_K82_Y0.433591.644
31_T79_Y0.433221.642
25_V78_V0.424471.609
26_I78_V0.419751.591
22_I74_I0.406651.542
49_W52_Y0.401121.521
24_Q28_T0.391171.483
5_I8_S0.389571.477
53_G61_I0.368391.397
47_V69_L0.368111.396
50_L66_V0.361281.370
23_R26_I0.357511.355
20_P23_R0.350471.329
14_M42_M0.343621.303
53_G62_I0.343091.301
43_F69_L0.341271.294
19_L23_R0.332811.262
50_L53_G0.331331.256
67_F71_L0.324421.230
16_L71_L0.322441.222
62_I66_V0.320431.215
50_L54_I0.31871.208
54_I62_I0.317271.203
34_V39_F0.315041.194
38_P68_G0.313971.190
36_F40_L0.305551.158
26_I82_Y0.301731.144
21_Q33_S0.301581.143
39_F75_Y0.299591.136
36_F79_Y0.299111.134
25_V31_T0.292791.110
65_N68_G0.285041.081
49_W65_N0.283641.075
5_I9_V0.282351.070
43_F73_I0.28171.068
42_M46_C0.281061.066
21_Q45_N0.273251.036
38_P75_Y0.271071.028
78_V82_Y0.268671.019
47_V51_I0.264171.002
14_M45_N0.263951.001
64_P72_S0.263030.997
50_L62_I0.260160.986
18_P46_C0.260.986
7_A10_S0.25480.966
37_P41_A0.254020.963
64_P68_G0.246880.936
24_Q27_K0.244360.926
52_Y56_I0.243890.925
26_I83_P0.241210.915
73_I77_V0.238530.904
59_W63_V0.233610.886
60_P63_V0.230460.874
21_Q25_V0.227120.861
25_V28_T0.225770.856
7_A48_L0.224660.852
18_P42_M0.224170.850
31_T83_P0.222960.845
80_Y83_P0.220510.836
59_W66_V0.215480.817
61_I64_P0.215410.817
25_V34_V0.21520.816
15_F68_G0.212190.804
22_I39_F0.212020.804
58_D61_I0.211470.802
57_N70_V0.209650.795
34_V75_Y0.207040.785
50_L69_L0.20490.777
6_L56_I0.20490.777
70_V74_I0.203430.771
20_P45_N0.202590.768
62_I65_N0.202190.767
63_V70_V0.201830.765
14_M18_P0.200710.761
66_V70_V0.198380.752
49_W61_I0.197610.749
39_F72_S0.197410.748
51_I83_P0.197250.748
58_D80_Y0.196630.745
14_M17_S0.195840.742
55_L58_D0.195170.740
73_I80_Y0.194560.738
29_K81_I0.191650.727
50_L56_I0.190290.721
61_I65_N0.1880.713
17_S53_G0.187440.711
36_F76_L0.186990.709
7_A47_V0.18380.697
35_S75_Y0.183740.697
51_I55_L0.183280.695
31_T34_V0.182410.692
18_P38_P0.18220.691
18_P68_G0.182010.690
26_I30_S0.181530.688
76_L80_Y0.181270.687
39_F79_Y0.180980.686
16_L57_N0.180920.686
28_T32_G0.180530.684
30_S79_Y0.180120.683
48_L79_Y0.180110.683
25_V39_F0.17990.682
18_P39_F0.179210.679
8_S60_P0.179170.679
26_I74_I0.177850.674
27_K57_N0.177740.674
41_A49_W0.177520.673
51_I56_I0.175920.667
15_F71_L0.17590.667
22_I71_L0.175570.666
17_S46_C0.175540.666
41_A72_S0.175380.665
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
1vf5C0.4138160.859
4h44C0.4138140.862
1oo0A0.701113.80.862
3l1lA0.94259.90.871
3giaA0.9318.40.875
2y69M0.36787.60.877
3rkoK0.48286.20.881
1v54M0.36785.90.883
4djkA0.98854.50.889
4h44B0.73564.50.889
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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