GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
DBD_Tnp_Mut - MuDR family transposase
Pfam: PF03108 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Clan: CL0274
Length: 67
Sequences: 408
Seq/Len: 6.09
HH_delta: 0.877 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
37_D40_R0.329312.627
13_K17_K0.265042.114
12_S15_E0.253462.022
33_V36_S0.248871.985
33_V41_Y0.239971.914
45_C50_C0.219991.755
16_F54_V0.188831.506
4_L10_F0.178411.423
18_E22_E0.165731.322
26_K51_P0.164261.310
13_K65_F0.15891.268
16_F41_Y0.15621.246
7_G52_W0.153711.226
16_F33_V0.152191.214
13_K36_S0.151851.211
9_T12_S0.148691.186
17_K36_S0.148361.183
31_F59_R0.145721.162
5_E26_K0.142251.135
20_V31_F0.140921.124
57_S65_F0.139391.112
26_K46_K0.131621.050
40_R44_K0.13021.039
4_L44_K0.129921.036
8_Q29_F0.128141.022
9_T28_G0.127971.021
11_P37_D0.127851.020
9_T66_Q0.127631.018
4_L8_Q0.127491.017
21_R29_F0.126511.009
56_A65_F0.125411.000
5_E48_K0.124840.996
39_K62_S0.123670.987
58_K63_D0.122730.979
14_E44_K0.121090.966
6_V56_A0.120320.960
16_F52_W0.119910.957
61_R64_T0.119230.951
15_E47_D0.11920.951
52_W56_A0.11890.948
19_A30_E0.117910.941
16_F56_A0.117060.934
5_E49_G0.114470.913
63_D66_Q0.114090.910
7_G10_F0.113370.904
42_R53_R0.112730.899
23_Y61_R0.112310.896
25_I56_A0.111540.890
51_P54_V0.111250.887
18_E46_K0.110450.881
24_A58_K0.110350.880
16_F25_I0.110130.879
11_P64_T0.109530.874
16_F31_F0.109290.872
43_A47_D0.109190.871
37_D42_R0.108320.864
30_E48_K0.108030.862
36_S65_F0.107210.855
25_I65_F0.106920.853
38_K49_G0.106470.849
14_E38_K0.106430.849
22_E41_Y0.106210.847
17_K65_F0.105790.844
44_K55_R0.105470.841
60_K63_D0.104410.833
39_K58_K0.103230.823
36_S41_Y0.10270.819
22_E57_S0.102030.814
34_K42_R0.101850.812
17_K51_P0.101490.810
25_I32_K0.101430.809
8_Q11_P0.100640.803
35_K49_G0.100550.802
45_C49_G0.099770.796
8_Q23_Y0.099720.795
47_D62_S0.09950.794
32_K46_K0.098860.789
32_K54_V0.098410.785
5_E63_D0.098310.784
31_F55_R0.098210.783
22_E31_F0.097250.776
4_L32_K0.096760.772
51_P61_R0.096410.769
24_A53_R0.096240.768
7_G43_A0.096210.767
17_K47_D0.095770.764
33_V66_Q0.095550.762
8_Q28_G0.09510.759
17_K40_R0.094620.755
34_K47_D0.094290.752
23_Y52_W0.09390.749
8_Q13_K0.093260.744
34_K49_G0.093210.744
27_N53_R0.092480.738
9_T58_K0.092460.738
20_V43_A0.090770.724
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
2ljuA0.77618.10.877
4gwmA0.91047.90.878
2jyaA0.83587.60.879
3vz9B0.86575.50.886
3cuqA0.86575.50.886
2f1zA0.85075.30.887
3hotA0.77615.10.887
1u5tA0.91044.30.891
2ymbA0.716440.892
3k5iA13.30.897
If you are interested in a protein containing this domain,
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