GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
MHYT - Bacterial signalling protein N terminal repeat
Pfam: PF03707 (v26) Consensus Sequence
Length: 62
Sequences: 899
Seq/Len: 14.5
HH_delta: 0.816 (11Mar13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
1_G36_V0.534652.523
9_Y28_T0.442112.086
7_M11_G0.400881.892
34_I38_A0.350611.655
5_W28_T0.313471.479
23_Y28_T0.312821.476
2_L16_R0.29221.379
5_W9_Y0.286381.351
4_I8_H0.280691.325
6_S48_R0.269781.273
9_Y31_S0.260431.229
24_D27_L0.258531.220
41_V44_W0.255961.208
40_A44_W0.24291.146
5_W32_L0.242471.144
39_S43_L0.242181.143
4_I7_M0.240151.133
8_H31_S0.23881.127
35_A39_S0.235611.112
28_T32_L0.234341.106
8_H11_G0.230381.087
16_R19_A0.22911.081
19_A22_S0.225581.065
16_R33_L0.223831.056
4_I39_S0.222091.048
8_H12_M0.221381.045
11_G14_A0.221041.043
45_L51_S0.220641.041
4_I38_A0.21961.036
12_M23_Y0.217991.029
8_H42_A0.209130.987
26_P30_L0.209030.986
37_A50_R0.207550.979
29_V49_A0.200630.947
18_P48_R0.197990.934
10_T17_F0.195580.923
21_I41_V0.194980.920
10_T28_T0.192930.910
2_L6_S0.192710.909
15_Y19_A0.191170.902
32_L45_L0.189160.893
13_A28_T0.188990.892
33_L37_A0.188320.889
31_S43_L0.186080.878
2_L53_R0.184910.873
30_L35_A0.183930.868
2_L29_V0.180530.852
3_G6_S0.180280.851
47_F51_S0.179160.846
30_L33_L0.178640.843
3_G7_M0.178120.841
18_P22_S0.177850.839
12_M34_I0.177190.836
13_A19_A0.176320.832
4_I31_S0.175390.828
42_A46_A0.173990.821
9_Y12_M0.173980.821
7_M31_S0.172520.814
14_A42_A0.17250.814
44_W47_F0.172280.813
1_G35_A0.171170.808
37_A52_R0.169650.801
2_L24_D0.166480.786
34_I41_V0.165530.781
18_P52_R0.165410.781
20_P40_A0.163740.773
11_G17_F0.161410.762
6_S10_T0.161390.762
21_I37_A0.161250.761
7_M17_F0.160450.757
16_R52_R0.159430.752
25_P29_V0.157840.745
27_L34_I0.157650.744
9_Y47_F0.157640.744
14_A20_P0.157010.741
4_I16_R0.156910.740
13_A29_V0.155860.736
6_S14_A0.151720.716
4_I12_M0.151570.715
38_A43_L0.15130.714
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
4ev6A0.725823.30.816
2iubA0.725818.10.825
1iijA0.56451.40.894
3rkoM0.58061.30.896
3tijA0.69351.10.9
3rlfF110.902
3o7qA0.806510.902
3qz1A0.580610.903
4hg6A0.903210.904
3ddlA0.83870.90.904
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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