GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
MHYT - Bacterial signalling protein N terminal repeat
Pfam: PF03707 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 62
Sequences: 1308
Seq/Len: 21.1
HH_delta: 0.785 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
1_G36_V0.540772.071
7_M11_G0.479541.836
34_I38_A0.455651.745
9_Y28_T0.422431.617
24_D27_L0.376521.442
23_Y28_T0.364461.395
8_H12_M0.361341.384
40_A44_W0.358151.371
4_I8_H0.346261.326
41_V44_W0.333481.277
47_F50_R0.328391.257
4_I39_S0.321421.231
28_T32_I0.320871.229
26_P30_L0.319911.225
8_H11_G0.317961.217
8_H31_S0.314961.206
5_W28_T0.310191.188
47_F51_S0.28821.103
16_R19_G0.285621.094
45_I51_S0.283751.086
20_P40_A0.279441.070
2_L16_R0.27911.069
39_S43_L0.273781.048
13_A28_T0.273351.047
31_S36_V0.270981.038
5_W36_V0.26861.028
29_L33_L0.264831.014
5_W9_Y0.263841.010
11_G14_A0.263511.009
7_M17_F0.259820.995
26_P29_L0.258780.991
33_L37_L0.255520.978
18_P48_R0.254970.976
32_I36_V0.253650.971
37_L50_R0.253590.971
12_M23_Y0.253430.970
40_A50_R0.249720.956
44_W47_F0.249150.954
14_A42_A0.247860.949
21_I41_V0.244790.937
4_I7_M0.242710.929
9_Y31_S0.240920.922
30_L33_L0.240890.922
35_A39_S0.239570.917
4_I12_M0.23850.913
4_I35_A0.23760.910
17_F20_P0.236580.906
2_L48_R0.233860.895
45_I49_A0.230990.884
3_G44_W0.230110.881
7_M12_M0.227010.869
3_G7_M0.225130.862
5_W32_I0.224110.858
42_A45_I0.221370.848
34_I44_W0.216860.830
29_L50_R0.215790.826
9_Y12_M0.21460.822
27_L30_L0.209620.803
7_M31_S0.207060.793
31_S46_L0.206150.789
16_R25_P0.202610.776
22_S40_A0.20110.770
40_A46_L0.198930.762
25_P50_R0.197760.757
34_I41_V0.197390.756
19_G22_S0.195080.747
18_P22_S0.192750.738
22_S48_R0.189320.725
11_G23_Y0.18930.725
3_G6_A0.188930.723
16_R26_P0.183120.701
6_A10_T0.181990.697
28_T31_S0.181940.697
13_A51_S0.18140.695
21_I47_F0.180850.692
17_F22_S0.180630.692
24_D51_S0.179070.686
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
2iubA0.725821.50.785
4i0uA0.725818.70.791
4ev6A0.725818.20.792
3tijA0.693520.864
4he8L0.59681.70.869
1zcdA0.82261.40.875
3ig5A0.98391.30.878
3rlfF11.20.88
3qz1A0.580610.884
1xioA0.98390.90.888
If you are interested in a protein containing this domain,
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