GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
YjgP_YjgQ - Predicted permease YjgPYjgQ family
Pfam: PF03739 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Clan: CL0404
Length: 354
Sequences: 2182
Seq/Len: 6.16
HH_delta: 0.963 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
187_K204_D0.459325.791
205_G222_F0.380584.798
157_G168_N0.357414.506
273_H338_W0.240523.032
188_E203_K0.239043.014
74_R78_N0.202932.558
173_Q182_R0.189142.385
271_E275_R0.188422.376
158_K167_K0.187732.367
72_L98_I0.186932.357
252_L272_L0.181262.285
259_K269_E0.178432.250
67_A71_T0.173682.190
11_F67_A0.17132.160
342_I346_I0.167682.114
199_Y226_E0.163592.062
186_A202_L0.158892.003
123_K126_E0.153281.933
277_A338_W0.152021.917
274_K323_S0.151651.912
102_A286_V0.150141.893
206_K221_S0.149761.888
119_W123_K0.147261.857
191_W233_P0.146441.846
192_K201_I0.144091.817
84_M89_I0.14341.808
346_I350_Y0.141571.785
190_I203_K0.141221.780
50_Y120_S0.133261.680
152_R173_Q0.132741.674
75_L84_M0.131771.661
18_F59_I0.13031.643
203_K224_S0.129831.637
280_L338_W0.12941.631
5_K9_K0.12941.631
201_I224_S0.128981.626
247_S250_E0.127681.610
1_R5_K0.127331.605
182_R209_T0.126361.593
281_S315_Y0.125241.579
106_S283_L0.124791.573
107_L111_I0.124251.567
189_A202_L0.124231.566
184_I207_I0.124161.565
15_L63_A0.123751.560
209_T220_I0.123061.552
49_L53_P0.121451.531
64_F282_C0.121281.529
284_I344_F0.120681.522
326_G336_A0.120331.517
256_K259_K0.120091.514
6_E74_R0.118451.493
332_P335_I0.117811.485
34_F44_I0.116321.467
288_L348_G0.115571.457
186_A189_A0.113881.436
112_L116_I0.11321.427
348_G352_L0.112231.415
182_R207_I0.111781.409
19_T52_L0.110281.390
53_P61_P0.110251.390
103_L107_L0.108361.366
156_I166_L0.107161.351
3_I84_M0.10681.347
201_I226_E0.106551.343
65_L285_L0.106011.337
106_S279_P0.105941.336
270_T275_R0.105921.335
22_F55_I0.105911.335
46_K50_Y0.104981.324
15_L56_L0.104451.317
142_P158_K0.103831.309
204_D223_E0.103211.301
11_F63_A0.102941.298
167_K188_E0.102581.293
79_N296_F0.102551.293
63_A67_A0.100951.273
45_L49_L0.100591.268
270_T327_E0.100051.261
171_I202_L0.099921.260
40_P43_D0.098451.241
4_L101_F0.096991.223
345_L349_L0.096911.222
145_F155_Y0.096191.213
30_L48_I0.095851.208
14_V66_I0.095561.205
2_Y84_M0.093631.180
126_E130_E0.093351.177
95_L290_L0.093021.173
169_V189_A0.09271.169
15_L19_T0.09141.152
96_R100_I0.091331.151
61_P86_A0.090961.147
60_L109_S0.090521.141
111_I115_W0.090371.139
111_I116_I0.090041.135
160_D167_K0.089931.134
68_V286_V0.088861.120
338_W341_N0.088451.115
2_Y61_P0.088211.112
10_T71_T0.087971.109
39_V44_I0.087451.103
32_D35_L0.087281.100
284_I341_N0.087131.099
166_L189_A0.086941.096
47_Y128_I0.086761.094
317_I321_F0.086341.089
322_F336_A0.086011.084
73_G291_P0.085671.080
169_V202_L0.085651.080
7_F71_T0.085621.079
41_F45_L0.085571.079
283_L343_I0.085551.079
279_P282_C0.085181.074
11_F105_L0.085141.073
46_K123_K0.08491.070
307_I311_L0.084711.068
207_I220_I0.084171.061
342_I345_L0.083641.055
209_T218_S0.083371.051
84_M94_L0.083241.049
140_I156_I0.082991.046
255_I272_L0.082951.046
169_V262_G0.082931.046
72_L290_L0.082891.045
144_L332_P0.08211.035
200_W236_F0.082061.035
22_F59_I0.081891.032
251_L275_R0.081681.030
64_F68_V0.081561.028
117_V120_S0.081241.024
345_L348_G0.081181.023
23_L48_I0.081081.022
147_R154_I0.081011.021
160_D164_N0.080971.021
69_L308_A0.080851.019
171_I293_G0.080781.018
222_F225_Y0.08041.014
323_S327_E0.079931.008
99_I287_L0.079441.002
114_E275_R0.079341.000
173_Q176_E0.079321.000
191_W200_W0.07931.000
266_R269_E0.079090.997
293_G315_Y0.078580.991
22_F291_P0.07850.990
90_S93_R0.078390.988
265_R269_E0.078390.988
110_F114_E0.078320.987
343_I349_L0.07790.982
98_I286_V0.077820.981
145_F312_G0.077720.980
322_F338_W0.077670.979
122_K126_E0.077620.979
76_S81_L0.077580.978
254_A258_L0.077580.978
187_K349_L0.077540.978
85_R298_R0.077170.973
11_F15_L0.077170.973
26_D30_L0.077090.972
27_L270_T0.077040.971
100_I104_L0.076960.970
349_L353_R0.076910.970
47_Y51_N0.076860.969
79_N298_R0.076770.968
277_A341_N0.076640.966
258_L275_R0.076460.964
212_K347_L0.076380.963
200_W233_P0.076260.961
6_E315_Y0.076230.961
51_N54_Y0.076190.961
174_F180_L0.076140.960
57_S113_S0.076110.960
43_D46_K0.07610.959
67_A86_A0.075990.958
79_N82_V0.075990.958
207_I222_F0.075980.958
285_L319_F0.075930.957
207_I225_Y0.075890.957
14_V306_F0.075850.956
27_L73_G0.075760.955
21_I298_R0.075320.950
81_L294_I0.075070.946
199_Y228_N0.074760.943
85_R91_L0.074670.941
12_L187_K0.074670.941
63_A120_S0.074560.940
81_L94_L0.07440.938
16_L184_I0.074280.937
156_I189_A0.074160.935
99_I102_A0.07390.932
7_F101_F0.073820.931
120_S335_I0.073630.928
105_L231_L0.073450.926
118_P275_R0.073380.925
334_F342_I0.073240.923
103_L211_S0.073010.920
39_V72_L0.072970.920
54_Y58_L0.072850.918
171_I189_A0.072690.916
42_S46_K0.072650.916
82_V291_P0.072640.916
114_E145_F0.072590.915
66_I83_A0.072230.911
187_K203_K0.071980.908
246_L250_E0.07190.906
177_D314_L0.071830.906
302_I326_G0.071710.904
322_F325_L0.07170.904
80_E251_L0.071680.904
192_K197_N0.071650.903
157_G188_E0.07140.900
297_P302_I0.071290.899
93_R96_R0.071280.899
91_L97_P0.071230.898
50_Y123_K0.071180.897
17_S71_T0.071120.897
108_I112_L0.071050.896
251_L255_I0.070920.894
343_I350_Y0.070910.894
283_L291_P0.070860.893
310_L314_L0.070410.888
54_Y121_N0.070390.887
208_Y336_A0.070380.887
266_R329_G0.070330.887
47_Y220_I0.07030.886
75_L230_S0.070240.886
125_E328_N0.070080.884
308_A312_G0.070080.884
320_S324_S0.070070.883
61_P75_L0.070040.883
189_A205_G0.069790.880
180_L200_W0.069580.877
47_Y124_A0.069470.876
168_N185_T0.069460.876
14_V24_I0.069360.874
107_L345_L0.06930.874
190_I201_I0.069140.872
16_L347_L0.069070.871
4_L105_L0.069040.870
192_K342_I0.069040.870
108_I176_E0.068970.870
4_L97_P0.068970.870
59_I308_A0.068820.868
78_N318_L0.06880.867
103_L283_L0.068780.867
107_L212_K0.068750.867
50_Y352_L0.068740.867
326_G337_A0.068730.867
87_S91_L0.068690.866
72_L94_L0.068180.860
140_I144_L0.068180.860
115_W249_S0.068140.859
13_L79_N0.068130.859
294_I297_P0.068120.859
103_L123_K0.067960.857
210_F217_F0.06790.856
110_F117_V0.067870.856
237_S339_L0.067830.855
95_L98_I0.067820.855
82_V298_R0.067680.853
114_E248_L0.067470.851
104_L107_L0.067430.850
42_S45_L0.067380.850
281_S341_N0.067320.849
265_R349_L0.067260.848
271_E274_K0.067260.848
315_Y344_F0.067220.847
188_E204_D0.067210.847
231_L285_L0.067050.845
106_S114_E0.067030.845
65_L85_R0.066850.843
162_N253_A0.066850.843
255_I262_G0.066690.841
59_I63_A0.066530.839
94_L130_E0.066470.838
35_L39_V0.066320.836
140_I205_G0.066270.836
326_G333_P0.066120.834
332_P336_A0.066040.833
183_I208_Y0.066010.832
107_L223_E0.065970.832
176_E179_N0.06590.831
272_L276_I0.065780.829
225_Y230_S0.065780.829
317_I344_F0.065760.829
102_A283_L0.065740.829
51_N245_E0.065650.828
331_L336_A0.065610.827
49_L119_W0.065410.825
199_Y349_L0.065310.823
241_K250_E0.06530.823
145_F172_I0.06530.823
34_F307_I0.065270.823
25_I55_I0.065220.822
25_I316_Y0.065170.822
2_Y86_A0.06510.821
285_L308_A0.065070.820
40_P44_I0.065060.820
14_V18_F0.064960.819
63_A284_I0.064960.819
284_I291_P0.064950.819
6_E82_V0.064840.817
7_F14_V0.064840.817
236_F280_L0.064680.815
71_T75_L0.064610.815
270_T337_A0.064530.814
7_F82_V0.064470.813
34_F37_K0.064440.812
284_I345_L0.064440.812
48_I70_L0.064430.812
6_E71_T0.064280.810
280_L341_N0.063980.807
8_L12_L0.063860.805
59_I62_L0.063770.804
313_F316_Y0.063680.803
86_A241_K0.063680.803
327_E330_N0.063630.802
30_L39_V0.063630.802
335_I338_W0.06360.802
283_L350_Y0.063450.800
313_F319_F0.063350.799
167_K262_G0.063260.798
110_F342_I0.063220.797
3_I11_F0.063220.797
79_N86_A0.063210.797
10_T22_F0.063190.797
127_I316_Y0.063170.796
264_N269_E0.063150.796
106_S282_C0.063120.796
75_L79_N0.063090.795
292_L336_A0.063040.795
39_V309_L0.062990.794
82_V85_R0.062970.794
119_W314_L0.062960.794
14_V312_G0.062920.793
115_W118_P0.062910.793
57_S278_L0.062750.791
145_F222_F0.062710.791
116_I119_W0.062660.790
45_L167_K0.062640.790
319_F341_N0.062560.789
315_Y341_N0.062460.787
190_I343_I0.062360.786
51_N124_A0.062360.786
108_I334_F0.062340.786
330_N334_F0.062010.782
329_G336_A0.061930.781
72_L289_A0.061920.781
102_A116_I0.061840.780
113_S278_L0.061760.779
114_E276_I0.06170.778
30_L34_F0.061580.776
19_T23_L0.061560.776
145_F170_F0.06150.775
318_L343_I0.061280.773
154_I317_I0.061270.772
218_S249_S0.061160.771
10_T305_L0.061130.771
42_S161_P0.061120.771
158_K252_L0.061030.769
116_I120_S0.061030.769
18_F202_L0.061020.769
62_L79_N0.060890.768
190_I223_E0.060820.767
66_I296_F0.06080.767
91_L290_L0.060790.766
113_S118_P0.060790.766
60_L347_L0.060770.766
96_R156_I0.060760.766
204_D253_A0.06070.765
286_V309_L0.060680.765
12_L103_L0.060640.765
109_S112_L0.060540.763
159_Y166_L0.060490.763
274_K340_P0.060470.762
342_I347_L0.060450.762
212_K216_S0.060420.762
244_K267_K0.06040.762
39_V208_Y0.060380.761
65_L289_A0.060350.761
145_F189_A0.060350.761
22_F82_V0.060170.759
291_P352_L0.060170.759
9_K13_L0.060140.758
211_S335_I0.060140.758
50_Y89_I0.060140.758
22_F26_D0.060130.758
186_A205_G0.060110.758
174_F200_W0.06010.758
74_R318_L0.060080.757
20_G24_I0.060020.757
305_L312_G0.059980.756
111_I235_E0.059850.755
65_L300_G0.059810.754
154_I164_N0.059790.754
300_G304_S0.059710.753
273_H276_I0.05970.753
176_E256_K0.05970.753
246_L249_S0.059460.750
166_L205_G0.059420.749
244_K251_L0.059420.749
12_L343_I0.059320.748
200_W301_R0.059320.748
34_F67_A0.059270.747
98_I172_I0.059270.747
170_F339_L0.059260.747
324_S348_G0.059240.747
118_P315_Y0.059220.747
140_I191_W0.059190.746
55_I58_L0.059040.744
7_F64_F0.059020.744
281_S348_G0.058970.743
167_K211_S0.058960.743
62_L312_G0.058960.743
331_L335_I0.058950.743
65_L114_E0.058930.743
3_I270_T0.058910.743
21_I65_L0.058840.742
140_I200_W0.058820.742
110_F245_E0.058810.741
92_K96_R0.05870.740
2_Y80_E0.058690.740
2_Y6_E0.05860.739
169_V258_L0.058550.738
66_I180_L0.058520.738
5_K347_L0.058380.736
315_Y319_F0.058380.736
200_W265_R0.058350.736
39_V168_N0.058290.735
47_Y306_F0.058210.734
213_D216_S0.058180.734
335_I342_I0.05810.733
294_I301_R0.058090.732
4_L12_L0.058060.732
62_L313_F0.057950.731
131_I137_S0.05780.729
78_N285_L0.057780.728
189_A200_W0.057770.728
20_G91_L0.057750.728
176_E181_Q0.057740.728
25_I47_Y0.057720.728
169_V188_E0.057590.726
6_E75_L0.057570.726
10_T67_A0.057530.725
231_L337_A0.057480.725
223_E226_E0.057450.724
90_S248_L0.057440.724
154_I231_L0.057440.724
204_D221_S0.057270.722
256_K260_K0.057250.722
273_H277_A0.057250.722
35_L155_Y0.057190.721
76_S301_R0.057170.721
75_L299_S0.057130.720
205_G223_E0.057120.720
127_I131_I0.057110.720
279_P308_A0.057110.720
96_R342_I0.057090.720
124_A128_I0.057070.720
85_R282_C0.057060.719
25_I69_L0.057040.719
152_R227_L0.057010.719
273_H337_A0.056930.718
30_L76_S0.056930.718
73_G118_P0.056920.718
37_K131_I0.056850.717
14_V322_F0.056840.717
316_Y320_S0.056840.717
289_A308_A0.056830.716
188_E224_S0.056780.716
322_F340_P0.056750.715
53_P120_S0.056750.715
257_F260_K0.056730.715
306_F348_G0.056710.715
1_R4_L0.056690.715
263_L269_E0.056670.714
101_F229_I0.056660.714
145_F205_G0.056650.714
24_I53_P0.056640.714
87_S282_C0.056610.714
108_I213_D0.056520.713
125_E238_R0.056510.712
209_T222_F0.056490.712
40_P207_I0.056480.712
100_I284_I0.056450.712
109_S281_S0.056440.712
82_V313_F0.056390.711
111_I114_E0.056390.711
285_L316_Y0.056350.710
153_I338_W0.056320.710
208_Y217_F0.05630.710
249_S339_L0.056240.709
251_L308_A0.056220.709
273_H294_I0.056160.708
72_L316_Y0.056140.708
108_I177_D0.056140.708
77_R115_W0.056090.707
13_L60_L0.056070.707
89_I218_S0.056070.707
79_N299_S0.056060.707
47_Y52_L0.056050.707
270_T326_G0.056040.707
318_L334_F0.056010.706
50_Y331_L0.055980.706
335_I343_I0.055930.705
133_S351_L0.055750.703
128_I245_E0.055730.703
248_L313_F0.055680.702
210_F310_L0.055660.702
171_I188_E0.055660.702
47_Y156_I0.055640.701
220_I253_A0.055640.701
205_G208_Y0.055510.700
35_L341_N0.055510.700
265_R318_L0.055470.699
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
1oedC0.234516.90.963
1oedB0.234516.70.963
1oedE0.234515.80.963
3kcuA0.319214.10.964
3tlwA0.324913.20.964
1oedA0.234513.10.964
4hfiA0.28817.30.968
3klyA0.31647.30.968
2rddB0.06217.20.968
3aqpA0.39837.10.968
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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