GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
YicC_N - YicC-like family N-terminal region
Pfam: PF03755 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 159
Sequences: 1064
Seq/Len: 6.69
HH_delta: 0.947 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
55_K143_D0.514273.599
85_K97_E0.430953.016
51_L139_E0.421692.951
2_K150_E0.401892.813
81_E93_E0.390352.732
21_V65_I0.378442.649
80_N117_K0.368312.578
25_S145_L0.354412.480
56_L61_V0.343972.407
35_I48_I0.335872.351
48_I138_L0.315282.207
56_L145_L0.30362.125
12_A137_A0.252221.765
55_K146_I0.245641.719
34_S60_K0.240721.685
147_A151_R0.236671.656
10_A137_A0.236541.655
52_I142_L0.235031.645
150_E154_E0.234281.640
28_H60_K0.233971.637
95_A102_G0.232621.628
84_A94_L0.225891.581
105_S108_D0.224831.573
143_D147_A0.222521.557
10_A141_A0.219211.534
154_E157_K0.20551.438
55_K139_E0.205441.438
33_I52_I0.203821.426
50_K54_K0.202551.418
135_L139_E0.19621.373
144_E147_A0.195991.372
31_L61_V0.192271.346
94_L109_L0.188181.317
147_A150_E0.187211.310
42_S60_K0.187081.309
18_S68_E0.181721.272
19_I137_A0.181441.270
21_V137_A0.174011.218
109_L115_V0.173871.217
8_G39_R0.172311.206
42_S62_E0.171671.201
52_I63_V0.171081.197
87_Y112_L0.169191.184
85_K98_L0.169121.184
88_Y92_K0.166441.165
28_H32_D0.162821.140
80_N83_L0.162411.137
8_G141_A0.160761.125
10_A140_E0.158721.111
21_V87_Y0.156841.098
89_E92_K0.15471.083
30_F60_K0.154691.083
33_I49_R0.15381.076
8_G21_V0.153511.074
52_I138_L0.152141.065
32_D49_R0.151271.059
79_I90_A0.150241.051
134_L145_L0.148461.039
81_E97_E0.148041.036
140_E143_D0.146891.028
51_L135_L0.146841.028
41_L67_V0.146321.024
26_V29_R0.14621.023
17_G24_K0.144091.008
139_E143_D0.143251.003
155_A158_K0.142110.995
9_R22_E0.141380.989
12_A140_E0.141170.988
19_I134_L0.139550.977
11_E20_S0.139070.973
28_H62_E0.138870.972
19_I24_K0.13750.962
6_G67_V0.136050.952
32_D53_R0.135640.949
154_E158_K0.135260.947
88_Y98_L0.135190.946
39_R42_S0.135030.945
91_L110_L0.134760.943
26_V130_L0.134060.938
91_L112_L0.133060.931
49_R53_R0.131910.923
93_E96_E0.131840.923
43_S56_L0.131750.922
23_I63_V0.131570.921
50_K60_K0.130680.915
21_V138_L0.130440.913
9_R28_H0.129790.908
47_E135_L0.128950.902
24_K49_R0.12890.902
87_Y159_D0.128570.900
84_A115_V0.127920.895
29_R60_K0.127810.894
141_A145_L0.127430.892
34_S62_E0.127140.890
133_A136_E0.126470.885
83_L115_V0.125690.880
82_E85_K0.125370.877
15_D144_E0.125180.876
93_E97_E0.125040.875
131_W135_L0.124930.874
29_R62_E0.123680.866
14_T133_A0.122450.857
85_K89_E0.122270.856
23_I99_G0.122210.855
44_L134_L0.121160.848
46_P60_K0.121070.847
134_L137_A0.120360.842
23_I52_I0.11880.831
69_R73_S0.118370.828
8_G90_A0.117370.821
85_K133_A0.116960.819
102_G105_S0.115440.808
92_K96_E0.115050.805
49_R113_P0.11420.799
54_K139_E0.114070.798
24_K109_L0.113990.798
1_I157_K0.113810.797
11_E18_S0.113540.795
29_R66_R0.113310.793
95_A104_I0.113250.793
29_R104_I0.113170.792
28_H36_R0.112910.790
86_A90_A0.112520.787
73_S89_E0.111970.784
26_V155_A0.111820.783
18_S45_E0.111740.782
19_I133_A0.11120.778
9_R26_V0.111130.778
7_F94_L0.110780.775
28_H34_S0.11040.773
95_A106_L0.110020.770
90_A98_L0.109590.767
48_I150_E0.109460.766
140_E144_E0.109450.766
48_I146_I0.107730.754
28_H44_L0.10770.754
11_E48_I0.107460.752
132_E147_A0.107340.751
91_L148_M0.107030.749
63_V141_A0.106640.746
96_E120_E0.106480.745
51_L54_K0.106370.744
97_E132_E0.106020.742
40_E64_S0.105890.741
8_G87_Y0.105870.741
73_S158_K0.105540.739
136_E139_E0.10540.738
132_E139_E0.104970.735
12_A19_I0.104950.734
120_E142_L0.104890.734
54_K132_E0.104860.734
2_K146_I0.104780.733
24_K39_R0.104750.733
29_R46_P0.104140.729
139_E142_L0.10410.729
104_I107_D0.103860.727
54_K95_A0.103650.725
88_Y91_L0.103520.724
108_D111_R0.103060.721
51_L138_L0.103050.721
23_I46_P0.102890.720
8_G113_P0.102730.719
25_S61_V0.102640.718
84_A98_L0.102610.718
90_A116_L0.102480.717
8_G159_D0.102250.716
139_E147_A0.101350.709
28_H53_R0.101110.708
29_R130_L0.100410.703
7_F28_H0.100230.701
132_E142_L0.100140.701
26_V113_P0.100140.701
30_F62_E0.100120.701
14_T19_I0.099520.696
17_G41_L0.099440.696
105_S109_L0.099060.693
13_E132_E0.09890.692
33_I60_K0.098820.692
84_A110_L0.098470.689
30_F39_R0.098380.689
62_E113_P0.097740.684
89_E154_E0.097390.682
89_E93_E0.097230.680
136_E140_E0.097020.679
75_V80_N0.096990.679
57_S155_A0.096960.679
26_V36_R0.096740.677
46_P148_M0.096670.677
114_G159_D0.096460.675
36_R114_G0.096420.675
15_D134_L0.096360.674
18_S141_A0.095950.672
35_I115_V0.095680.670
17_G62_E0.095430.668
151_R154_E0.094980.665
23_I54_K0.094920.664
19_I40_E0.094430.661
26_V145_L0.094340.660
32_D46_P0.093710.656
91_L106_L0.093510.654
55_K86_A0.093390.654
11_E51_L0.093220.652
4_M58_R0.093060.651
47_E74_A0.092790.649
60_K145_L0.092450.647
48_I139_E0.09240.647
132_E158_K0.092230.645
36_R64_S0.09220.645
29_R35_I0.092190.645
51_L75_V0.092120.645
83_L87_Y0.092110.645
79_I142_L0.0920.644
78_R117_K0.091970.644
148_M159_D0.091840.643
29_R34_S0.091770.642
7_F113_P0.091580.641
30_F107_D0.091470.640
129_E136_E0.091470.640
88_Y104_I0.091410.640
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
2g0iA0.641510.80.947
3h90A0.41519.90.948
3cjsB0.2399.60.948
3vf1A0.911990.949
3n9uC0.36487.20.951
2dvkA0.490670.951
1jhgA0.2396.90.951
2v8hA0.91826.90.951
1n0uA0.59126.60.951
3j39U0.69815.20.954
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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