GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
SPW - SPW repeat
Pfam: PF03779 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 51
Sequences: 442
Seq/Len: 8.67
HH_delta: 0.825 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
9_G35_G0.503652.817
30_N34_V0.34421.925
6_L43_L0.324041.813
17_W45_F0.308421.725
13_I32_V0.307751.722
5_N42_A0.26951.508
3_W45_F0.243061.360
2_E31_N0.237771.330
10_L16_P0.231541.295
28_A32_V0.225191.260
16_P21_F0.223311.249
19_L28_A0.217571.217
25_A34_V0.215151.204
17_W21_F0.208551.167
2_E21_F0.205811.151
38_V42_A0.203941.141
9_G39_A0.200661.122
14_V18_V0.21.119
6_L39_A0.195841.096
6_L42_A0.194421.088
4_L37_L0.190481.066
7_L20_G0.182221.019
39_A43_L0.179071.002
3_W44_W0.176380.987
3_W37_L0.171960.962
8_L23_A0.170040.951
17_W31_N0.166250.930
26_A30_N0.162740.910
22_S36_I0.159580.893
24_T43_L0.155250.868
10_L15_S0.154750.866
13_I35_G0.154680.865
26_A29_W0.154260.863
29_W33_I0.154110.862
27_A39_A0.15410.862
5_N38_V0.153640.859
13_I36_I0.152890.855
10_L26_A0.151680.848
2_E14_V0.150950.844
26_A37_L0.150270.841
8_L34_V0.149610.837
14_V26_A0.149360.836
13_I37_L0.147990.828
33_I40_L0.14690.822
11_W32_V0.14590.816
7_L37_L0.143080.800
8_L42_A0.143060.800
7_L29_W0.14040.785
3_W18_V0.139270.779
17_W41_L0.13630.762
18_V27_A0.135870.760
22_S26_A0.134170.751
29_W32_V0.132420.741
20_G25_A0.131220.734
4_L40_L0.129050.722
15_S18_V0.128690.720
24_T40_L0.128460.719
15_S38_V0.127860.715
8_L33_I0.127790.715
8_L41_L0.126690.709
13_I29_W0.125480.702
4_L36_I0.125420.702
15_S20_G0.125180.700
12_L42_A0.124620.697
20_G42_A0.124280.695
14_V19_L0.123760.692
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
1kqfC15.70.825
4apsA15.30.827
4gd3A13.70.838
3s0xA0.58823.50.841
1p58A0.84312.60.849
4iu9B12.40.854
4jr9A12.10.857
3giaA0.96082.10.857
4j05A11.70.863
3qe7A11.70.864
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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