GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
ATP_synt_I - ATP synthase I chain
Pfam: PF03899 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Clan: CL0478
Length: 100
Sequences: 697
Seq/Len: 6.97
HH_delta: 0.823 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
80_F99_L0.279222.263
39_N72_R0.270662.194
46_R68_G0.243731.975
43_L72_R0.237171.922
10_L33_G0.236081.913
12_V15_L0.196671.594
25_V94_A0.189631.537
83_A95_L0.186661.513
73_L77_I0.181291.469
35_I83_A0.17511.419
39_N43_L0.170631.383
48_F53_A0.168051.362
17_F21_F0.166721.351
7_L10_L0.165041.338
14_A18_F0.164051.330
70_F74_A0.161771.311
69_Y72_R0.158521.285
31_L83_A0.155981.264
29_F33_G0.155181.258
59_G70_F0.153751.246
29_F98_G0.153681.246
15_L19_L0.153531.244
76_T84_F0.153311.243
11_A14_A0.149381.211
42_L46_R0.146071.184
52_G59_G0.145891.182
17_F29_F0.145331.178
30_L60_R0.144221.169
25_V99_L0.144021.167
18_F26_A0.141031.143
35_I95_L0.140881.142
66_Y80_F0.137851.117
22_G25_V0.137741.116
42_L71_I0.136171.104
14_A33_G0.135681.100
43_L68_G0.135281.096
6_Q40_F0.13251.074
39_N76_T0.13151.066
91_N94_A0.131351.065
35_I39_N0.130381.057
39_N69_Y0.129341.048
31_L42_L0.12711.030
4_I8_I0.126381.024
17_F94_A0.126241.023
6_Q28_S0.122940.996
81_I85_K0.122040.989
46_R72_R0.121870.988
23_W78_L0.121470.985
11_A45_R0.121250.983
65_M69_Y0.120340.975
61_A72_R0.119810.971
69_Y73_L0.119790.971
63_R67_L0.119650.970
13_L20_F0.119290.967
72_R99_L0.118760.963
22_G29_F0.118110.957
43_L76_T0.117820.955
28_S69_Y0.116680.946
8_I16_V0.116510.944
39_N92_P0.11650.944
21_F95_L0.115480.936
38_L41_F0.115170.933
13_L16_V0.114720.930
20_F78_L0.114490.928
82_L85_K0.114140.925
19_L88_P0.114130.925
36_S39_N0.11410.925
17_F81_I0.1140.924
12_V71_I0.113030.916
66_Y70_F0.112330.910
38_L72_R0.112030.908
35_I80_F0.111710.905
24_P60_R0.110970.899
84_F96_L0.11090.899
30_L82_L0.109760.890
28_S38_L0.10970.889
15_L30_L0.109390.887
62_V95_L0.109250.885
10_L14_A0.109220.885
62_V71_I0.108850.882
76_T81_I0.108540.880
22_G33_G0.107760.873
9_L15_L0.107370.870
25_V29_F0.106910.867
15_L22_G0.106540.864
40_F84_F0.105370.854
31_L90_L0.104710.849
14_A30_L0.104630.848
81_I84_F0.104490.847
42_L72_R0.103960.843
15_L45_R0.103640.840
59_G63_R0.103070.835
8_I13_L0.102710.832
3_V46_R0.102060.827
28_S72_R0.101520.823
16_V85_K0.101490.823
39_N65_M0.101090.819
59_G91_N0.100740.817
36_S75_L0.100570.815
50_L53_A0.100280.813
66_Y69_Y0.100190.812
23_W26_A0.099850.809
9_L70_F0.099530.807
20_F23_W0.099440.806
20_F24_P0.098520.799
5_I84_F0.097910.794
18_F34_L0.097310.789
16_V34_L0.097230.788
61_A64_A0.097190.788
47_V51_A0.096970.786
10_L37_L0.096970.786
27_L95_L0.096410.781
13_L73_L0.096350.781
16_V19_L0.096150.779
72_R76_T0.095980.778
62_V72_R0.095540.774
94_A98_G0.095290.772
48_F51_A0.094980.770
24_P27_L0.094960.770
19_L78_L0.09470.768
3_V6_Q0.094380.765
78_L90_L0.094340.765
47_V64_A0.094310.764
23_W74_A0.094220.764
90_L94_A0.093690.759
50_L72_R0.093570.758
18_F23_W0.093560.758
42_L74_A0.093380.757
15_L63_R0.092590.750
16_V20_F0.092260.748
9_L78_L0.092120.747
43_L46_R0.092030.746
37_L90_L0.09190.745
73_L80_F0.091540.742
35_I69_Y0.09120.739
40_F83_A0.091050.738
24_P96_L0.09080.736
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
4av3A121.20.823
4a01A16.40.858
3ze3A0.94.40.868
4hw9A0.944.20.869
3l1lA0.63.80.872
3w4tA0.63.30.875
2kdcA0.930.877
3ne5A0.62.10.887
3dl8C0.412.10.887
2xq2A0.9920.887
If you are interested in a protein containing this domain,
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