GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
DUF347 - Repeat of Unknown Function (DUF347)
Pfam: PF03988 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 55
Sequences: 529
Seq/Len: 9.62
HH_delta: 0.836 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
8_I11_T0.367921.784
15_T47_W0.351611.705
7_K15_T0.349371.694
3_F7_K0.319141.548
42_V49_R0.301491.462
13_L18_G0.292231.417
21_L32_S0.28431.379
10_T16_T0.260651.264
42_V46_L0.259991.261
29_Y32_S0.259831.260
3_F15_T0.257271.248
12_T16_T0.246351.195
24_T29_Y0.245981.193
34_L38_A0.241521.171
34_L37_A0.238671.157
33_T36_F0.233351.132
15_T48_Y0.230651.118
41_A49_R0.230151.116
45_A49_R0.22881.109
7_K47_W0.228251.107
20_F36_F0.227651.104
42_V45_A0.227051.101
11_T15_T0.225651.094
23_K36_F0.224971.091
7_K11_T0.223941.086
41_A45_A0.223261.083
33_T37_A0.221291.073
49_R52_R0.220491.069
37_A41_A0.219911.066
15_T53_Y0.216141.048
1_L5_I0.215851.047
23_K29_Y0.21161.026
7_K12_T0.209831.018
30_L34_L0.209411.015
22_S32_S0.208921.013
27_L31_I0.20681.003
16_T28_G0.205660.997
6_A50_S0.205030.994
12_T28_G0.20430.991
38_A41_A0.201260.976
8_I12_T0.201070.975
18_G23_K0.200830.974
10_T40_L0.199120.966
37_A40_L0.19720.956
18_G54_R0.19680.954
20_F24_T0.193930.940
3_F47_W0.18910.917
7_K53_Y0.185710.901
47_W53_Y0.18460.895
30_L42_V0.183480.890
18_G44_L0.182580.885
8_I37_A0.182460.885
12_T24_T0.181170.879
32_S36_F0.17970.871
5_I38_A0.179610.871
13_L29_Y0.178490.866
9_L18_G0.169750.823
30_L33_T0.168330.816
13_L17_A0.16610.805
11_T47_W0.166080.805
2_F6_A0.165960.805
31_I38_A0.165490.802
40_L47_W0.162830.790
43_V52_R0.159120.772
27_L35_I0.158610.769
38_A45_A0.15840.768
39_L54_R0.158180.767
34_L45_A0.15810.767
1_L8_I0.158010.766
31_I35_I0.156760.760
20_F32_S0.156410.758
18_G22_S0.154690.750
3_F9_L0.154560.749
9_L24_T0.153450.744
25_L28_G0.153340.744
50_S54_R0.152160.738
34_L42_V0.151990.737
3_F53_Y0.151880.736
5_I50_S0.151190.733
38_A42_V0.151050.732
31_I52_R0.149010.723
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
4i0uA0.963614.30.836
2iubA0.963613.90.837
4ev6A0.963611.70.842
1v54D0.89099.50.848
2y69D0.890990.85
1yewA0.89098.40.851
2qi9A0.945580.853
2nq2A0.96367.80.853
4g1uA16.70.857
3mk7C0.65.20.864
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