GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
Sas10_Utp3 - Sas10Utp3C1D family
Pfam: PF04000 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 85
Sequences: 511
Seq/Len: 6.01
HH_delta: 0.845 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
75_E78_R0.228061.884
60_L70_H0.223751.848
78_R82_Y0.209061.727
60_L72_V0.186241.538
43_K50_Y0.184391.523
45_Q53_N0.174031.437
50_Y83_L0.173991.437
50_Y80_R0.173371.432
49_A79_I0.169621.401
16_L20_L0.165831.370
47_L84_E0.163381.349
40_L85_K0.157091.297
11_E72_V0.153061.264
46_L83_L0.152881.263
55_L78_R0.151091.248
42_A82_Y0.149611.236
77_V80_R0.147681.220
48_L61_K0.147281.216
54_L83_L0.143831.188
21_E28_E0.141661.170
7_E16_L0.140621.161
54_L58_M0.138981.148
57_Y70_H0.138231.142
64_G79_I0.138031.140
76_L79_I0.134911.114
79_I82_Y0.134741.113
56_F63_S0.133581.103
46_L56_F0.131521.086
12_V83_L0.130651.079
44_N62_L0.13021.075
9_L55_L0.130011.074
17_Q74_K0.128821.064
3_K74_K0.124621.029
45_Q48_L0.124341.027
51_I54_L0.123581.021
66_D69_D0.123051.016
49_A55_L0.121931.007
41_Q78_R0.121311.002
3_K42_A0.121041.000
39_L82_Y0.121010.999
4_E7_E0.120410.994
82_Y85_K0.119750.989
14_E21_E0.118830.981
54_L75_E0.118310.977
19_L46_L0.118110.975
42_A68_K0.117960.974
48_L83_L0.117410.970
43_K74_K0.117020.966
50_Y57_Y0.116630.963
18_P70_H0.116190.960
40_L43_K0.115320.952
42_A85_K0.114670.947
3_K72_V0.114370.945
67_P75_E0.114310.944
51_I78_R0.113340.936
72_V82_Y0.113160.935
5_L58_M0.113060.934
2_L47_L0.11260.930
81_Q85_K0.111280.919
40_L44_N0.111180.918
2_L31_L0.111140.918
66_D82_Y0.110970.917
50_Y61_K0.11030.911
81_Q84_E0.110220.910
23_V48_L0.109920.908
3_K16_L0.109610.905
49_A53_N0.109490.904
60_L71_P0.109310.903
16_L31_L0.109280.903
21_E69_D0.108970.900
19_L30_E0.108730.898
67_P73_M0.10860.897
47_L80_R0.107810.890
40_L78_R0.106720.881
7_E30_E0.106520.880
77_V84_E0.105830.874
21_E27_K0.105680.873
21_E29_E0.105490.871
40_L54_L0.105420.871
4_E10_D0.105350.870
44_N51_I0.105170.869
53_N56_F0.104840.866
2_L21_E0.104020.859
32_S69_D0.103250.853
18_P82_Y0.103190.852
59_Y83_L0.101880.841
23_V27_K0.101720.840
56_F72_V0.101710.840
9_L42_A0.100760.832
59_Y80_R0.100620.831
49_A73_M0.100430.829
50_Y73_M0.099840.825
30_E69_D0.098810.816
4_E57_Y0.098680.815
5_L60_L0.097990.809
61_K71_P0.097740.807
68_K81_Q0.09750.805
45_Q80_R0.097480.805
60_L76_L0.096920.800
10_D85_K0.096720.799
7_E17_Q0.096550.797
64_G67_P0.09640.796
2_L8_S0.096340.796
7_E31_L0.096120.794
45_Q56_F0.096050.793
78_R85_K0.095950.792
67_P70_H0.095760.791
6_S11_E0.094980.784
3_K68_K0.093860.775
7_E73_M0.093260.770
62_L70_H0.093180.770
4_E71_P0.093130.769
17_Q55_L0.092950.768
5_L8_S0.092870.767
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3ig3A0.823540.50.845
3rh3A0.941229.60.855
3hm6X0.835318.20.869
3ieeA0.941211.20.88
2yinA0.9647110.88
1wiwA0.83536.40.891
4hf1A0.51765.80.893
3v93A0.98825.40.895
3kfoA0.89415.40.895
3iynQ0.411850.897
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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