GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
PspC - PspC domain
Pfam: PF04024 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 61
Sequences: 1454
Seq/Len: 23.84
HH_delta: 0.856 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
14_A53_W1.667354.542
7_S18_A1.015742.767
17_C31_V0.811372.210
7_S10_D0.804632.192
22_E59_E0.798832.176
17_C35_F0.754552.055
6_R53_W0.725661.977
11_R58_K0.697121.899
51_I55_L0.653881.781
52_L56_L0.608491.658
7_S22_E0.598871.631
20_L31_V0.58871.604
10_D28_P0.569471.551
2_K23_Y0.545911.487
30_L34_I0.545141.485
8_R59_E0.526111.433
26_I31_V0.522881.424
4_L56_L0.518841.413
7_S11_R0.507021.381
21_A28_P0.493631.345
38_L41_F0.439261.197
39_T45_G0.438271.194
10_D18_A0.432091.177
42_T45_G0.42081.146
38_L42_T0.420221.145
8_R58_K0.419471.143
35_F39_T0.417321.137
38_L45_G0.373891.019
27_D30_L0.373591.018
48_L52_L0.372241.014
29_T33_L0.368441.004
18_A28_P0.368061.003
39_T46_I0.35980.980
5_Y59_E0.352490.960
24_F31_V0.33320.908
11_R18_A0.307170.837
6_R14_A0.305270.832
18_A22_E0.297260.810
12_V36_V0.292540.797
14_A50_L0.289180.788
9_D59_E0.287730.784
21_A31_V0.283240.772
12_V29_T0.279560.762
3_R23_Y0.27340.745
15_G19_G0.269820.735
35_F52_L0.268910.733
55_L58_K0.265450.723
16_V53_W0.260490.710
21_A26_I0.257080.700
52_L55_L0.255340.696
6_R56_L0.248710.678
5_Y56_L0.248260.676
4_L24_F0.243690.664
39_T44_G0.243250.663
40_F48_L0.243240.663
41_F45_G0.240110.654
6_R58_K0.239090.651
6_R59_E0.238230.649
41_F44_G0.232920.634
8_R22_E0.232160.632
23_Y56_L0.230480.628
27_D33_L0.223450.609
13_I41_F0.221650.604
19_G23_Y0.217430.592
22_E55_L0.216860.591
44_G47_L0.215350.587
8_R11_R0.214320.584
19_G56_L0.210790.574
45_G48_L0.209750.571
2_K24_F0.208220.567
4_L23_Y0.207930.566
50_L53_W0.202960.553
36_V39_T0.201010.548
9_D13_I0.199440.543
9_D12_V0.199160.543
3_R29_T0.198140.540
17_C21_A0.197260.537
35_F45_G0.194880.531
37_V41_F0.193090.526
21_A39_T0.193020.526
29_T55_L0.192720.525
21_A51_I0.192070.523
37_V43_G0.191430.521
50_L55_L0.191360.521
37_V40_F0.190590.519
34_I38_L0.189610.517
35_F48_L0.188790.514
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3ibzA0.45925.50.856
2qngA0.4918120.874
3czxA0.475411.70.875
1v54D0.868910.20.878
2y69D0.86899.30.88
1jwqA0.442660.889
3kreA0.49184.10.898
4eneA0.96723.70.9
3ne8A0.55743.50.901
4b03D0.75413.40.901
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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