GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
MrpF_PhaF - Multiple resistance and pH regulation protein F (MrpF PhaF)
Pfam: PF04066 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 55
Sequences: 773
Seq/Len: 14.05
HH_delta: 0.818 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
22_L26_T0.455662.465
2_A17_A0.323251.749
17_A51_R0.291131.575
31_Y52_F0.288941.563
9_D17_A0.258781.400
20_A44_V0.252061.364
6_V50_A0.251331.360
24_I46_T0.241471.306
12_S42_G0.240811.303
7_A37_V0.232341.257
21_L26_T0.231021.250
41_L46_T0.219631.188
11_I40_L0.219281.186
2_A52_F0.218441.182
43_F52_F0.214251.159
8_L24_I0.210751.140
3_D7_A0.205171.110
6_V23_A0.204081.104
41_L45_G0.20251.096
7_A11_I0.200911.087
14_L39_A0.195311.057
13_T16_V0.191041.034
20_A35_A0.190391.030
10_L49_F0.189891.027
3_D51_R0.18941.025
15_I25_I0.189181.023
23_A54_E0.189051.023
12_S38_Y0.188341.019
36_L41_L0.185541.004
17_A21_L0.184140.996
9_D46_T0.184060.996
15_I35_A0.183350.992
9_D42_G0.183020.990
32_L36_L0.181030.979
12_S51_R0.180540.977
12_S36_L0.179010.968
40_L50_A0.173570.939
31_Y48_A0.172380.933
18_L29_P0.172320.932
5_V49_F0.172230.932
25_I47_V0.17220.932
30_F34_I0.171890.930
38_Y46_T0.171080.926
36_L39_A0.171060.925
16_V38_Y0.17070.924
8_L52_F0.170240.921
2_A46_T0.168210.910
18_L48_A0.166590.901
30_F42_G0.161180.872
6_V11_I0.160570.869
43_F46_T0.160530.868
5_V9_D0.15940.862
31_Y34_I0.157590.853
18_L21_L0.157440.852
21_L49_F0.157390.852
50_A53_L0.156830.848
38_Y42_G0.156310.846
24_I29_P0.15350.830
2_A12_S0.153410.830
10_L40_L0.153080.828
16_V39_A0.153010.828
23_A33_D0.15220.823
45_G53_L0.151770.821
12_S47_V0.149580.809
38_Y47_V0.14940.808
24_I49_F0.148850.805
21_L28_R0.148530.804
16_V43_F0.146880.795
23_A29_P0.145750.789
34_I38_Y0.144470.782
37_V53_L0.14430.781
11_I48_A0.143420.776
36_L40_L0.142110.769
33_D51_R0.141320.765
46_T52_F0.141260.764
13_T48_A0.140630.761
19_L47_V0.14040.760
19_L45_G0.140070.758
14_L43_F0.139590.755
14_L18_L0.138730.751
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3sokA0.490915.40.818
1oqwA0.4909140.82
2hi2A0.490913.70.821
2rh8A0.58182.70.869
4i5sA0.63642.40.872
3j09A0.90912.30.873
3eheA0.43642.30.874
3j08A0.90912.10.876
3ossC0.34552.10.876
1wazA0.78182.10.876
If you are interested in a protein containing this domain,
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