GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
DUF502 - Protein of unknown function (DUF502)
Pfam: PF04367 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 108
Sequences: 663
Seq/Len: 6.14
HH_delta: 0.912 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
101_T107_S0.314862.579
9_F13_L0.304282.492
76_G97_V0.257032.105
104_N107_S0.239631.962
63_V76_G0.238091.950
62_V98_F0.233411.912
66_E70_P0.221871.817
7_L11_I0.215961.769
103_P106_T0.202881.661
66_E71_G0.194461.593
63_V78_V0.180661.480
75_I96_A0.178871.465
10_L14_L0.17471.431
85_E89_K0.173151.418
20_G103_P0.171.392
67_F72_M0.168921.383
66_E69_R0.167311.370
98_F104_N0.162771.333
17_N20_G0.155161.271
29_R33_R0.15261.250
74_V99_V0.151591.241
78_V95_V0.149411.224
6_L10_L0.148091.213
24_L45_K0.144981.187
66_E73_Y0.141191.156
34_I48_V0.139671.144
52_S59_F0.139031.139
101_T104_N0.138721.136
32_Q38_K0.138571.135
65_V99_V0.13841.133
5_L9_F0.137711.128
46_Q105_P0.136561.118
27_L30_L0.135811.112
98_F106_T0.134751.104
55_K70_P0.13251.085
18_Y102_S0.132471.085
80_G96_A0.132321.084
74_V107_S0.132121.082
15_A70_P0.131821.080
49_E98_F0.12831.051
9_F15_A0.128231.050
61_K78_V0.127351.043
28_E62_V0.126861.039
85_E88_G0.125681.029
57_K75_I0.125321.026
48_V99_V0.125281.026
21_K25_N0.125011.024
31_L99_V0.124891.023
101_T106_T0.124471.019
18_Y38_K0.124011.016
28_E78_V0.123791.014
20_G46_Q0.122931.007
28_E45_K0.122621.004
101_T105_P0.122581.004
30_L107_S0.122451.003
79_T98_F0.121530.995
36_L71_G0.121330.994
50_S106_T0.121150.992
47_L51_F0.120830.990
4_L8_I0.120120.984
64_L102_S0.119710.980
50_S59_F0.119230.976
88_G93_E0.118870.973
2_L55_K0.117740.964
6_L45_K0.117190.960
66_E96_A0.11710.959
5_L29_R0.116560.955
4_L16_R0.116530.954
19_F29_R0.11590.949
2_L10_L0.115570.946
26_W57_K0.11510.943
13_L16_R0.11480.940
67_F105_P0.11430.936
33_R36_L0.113650.931
67_F102_S0.113340.928
64_L68_P0.113230.927
47_L74_V0.112840.924
8_I28_E0.111620.914
81_E95_V0.111070.910
83_P88_G0.110870.908
22_W26_W0.110380.904
7_L94_M0.109860.900
46_Q67_F0.109060.893
75_I106_T0.109030.893
26_W29_R0.108410.888
28_E67_F0.108230.886
53_G102_S0.10780.883
5_L65_V0.106610.873
8_I78_V0.106190.870
67_F73_Y0.105350.863
23_L26_W0.10510.861
25_N31_L0.103920.851
6_L97_V0.103510.848
15_A99_V0.102690.841
16_R50_S0.102390.839
4_L17_N0.102190.837
11_I29_R0.101490.831
76_G94_M0.101470.831
50_S104_N0.101330.830
65_V72_M0.101270.829
5_L30_L0.101140.828
9_F34_I0.100450.823
13_L61_K0.100360.822
67_F107_S0.100150.820
65_V81_E0.099990.819
37_V40_I0.099780.817
53_G63_V0.099770.817
59_F77_F0.098810.809
49_E72_M0.098770.809
33_R39_S0.09860.807
26_W88_G0.097920.802
62_V68_P0.097880.802
76_G79_T0.09780.801
37_V61_K0.097480.798
29_R37_V0.097360.797
32_Q42_S0.097120.795
46_Q103_P0.097090.795
63_V72_M0.096990.794
50_S103_P0.096070.787
11_I16_R0.095980.786
25_N71_G0.095850.785
45_K52_S0.095240.780
23_L61_K0.095130.779
11_I58_S0.09480.776
51_F93_E0.094670.775
87_P97_V0.094440.773
32_Q55_K0.094020.770
3_I28_E0.093980.770
54_D77_F0.093970.770
14_L25_N0.093870.769
13_L36_L0.093550.766
44_I94_M0.093480.766
13_L17_N0.093430.765
40_I43_S0.093350.764
68_P103_P0.09330.764
14_L87_P0.093060.762
54_D57_K0.092860.760
83_P89_K0.092850.760
20_G106_T0.09240.757
5_L10_L0.092160.755
49_E66_E0.09210.754
16_R98_F0.09160.750
21_K40_I0.091340.748
14_L72_M0.091070.746
72_M79_T0.090450.741
57_K99_V0.090260.739
49_E82_D0.090240.739
44_I67_F0.090220.739
29_R56_K0.090140.738
3_I49_E0.089960.737
64_L73_Y0.089730.735
13_L99_V0.089520.733
10_L38_K0.089480.733
22_W78_V0.089440.732
20_G64_L0.089420.732
13_L32_Q0.089270.731
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
2cu5A0.407421.70.912
1scfA0.518511.10.923
2c34A0.33339.60.925
3arcL0.19448.90.926
3zuxA0.92596.50.93
2k21A0.755.30.933
3vk9A0.48155.10.933
1vf5G0.268550.933
3m86A0.34264.60.934
4e8hA0.49074.50.935
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

Page generated in 0.0117 seconds.