GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
ATE_N - Arginine-tRNA-protein transferase N terminus
Pfam: PF04376 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Clan: CL0257
Length: 80
Sequences: 567
Seq/Len: 7.09
HH_delta: 0.906 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
68_D71_E0.494833.478
37_Q41_D0.323732.275
47_S52_Y0.281841.981
56_C62_C0.239831.686
37_Q40_L0.221611.558
72_F78_Q0.213511.501
74_P78_Q0.210881.482
53_R64_P0.207281.457
36_Y48_G0.201611.417
44_F47_S0.191811.348
13_C39_L0.191651.347
51_F66_R0.189861.335
11_G36_Y0.189271.330
53_R65_I0.186741.313
32_S35_D0.183651.291
67_I78_Q0.181531.276
47_S54_P0.181011.272
18_A27_P0.177561.248
33_P79_R0.171921.208
56_C80_R0.169281.190
39_L47_S0.166031.167
10_C13_C0.164851.159
36_Y39_L0.163641.150
41_D64_P0.160851.131
36_Y40_L0.157831.109
5_T19_R0.155811.095
29_E67_I0.154861.088
3_G6_Q0.154771.088
62_C80_R0.14951.051
38_Q65_I0.148231.042
11_G51_F0.147591.037
33_P73_K0.147491.037
5_T22_Y0.145611.023
34_E38_Q0.145351.022
53_R79_R0.145281.021
19_R57_Q0.144511.016
20_S50_Y0.143271.007
49_N65_I0.143211.007
28_S65_I0.142381.001
20_S27_P0.140490.987
70_S73_K0.140280.986
71_E75_S0.140250.986
23_T29_E0.140230.986
21_S24_Y0.139030.977
37_Q42_R0.138320.972
8_S20_S0.137340.965
29_E32_S0.1360.956
21_S51_F0.135110.950
40_L65_I0.133870.941
28_S31_L0.133310.937
4_L55_N0.133130.936
48_G55_N0.132160.929
5_T57_Q0.132150.929
16_R58_S0.131660.925
54_P62_C0.129220.908
22_Y30_S0.128910.906
9_S16_R0.128030.900
33_P60_C0.127820.898
13_C62_C0.126840.892
28_S33_P0.126610.890
13_C60_C0.125340.881
8_S48_G0.125130.880
15_G71_E0.123430.868
38_Q60_C0.121980.857
16_R73_K0.120620.848
51_F65_I0.120490.847
6_Q47_S0.119360.839
9_S15_G0.118480.833
38_Q42_R0.118370.832
33_P70_S0.117940.829
20_S23_T0.117510.826
50_Y78_Q0.117440.825
3_G39_L0.117080.823
27_P79_R0.117060.823
61_A67_I0.116540.819
44_F52_Y0.116520.819
17_S58_S0.116510.819
66_R74_P0.116210.817
14_P49_N0.115650.813
8_S24_Y0.115590.812
34_E58_S0.115420.811
64_P76_K0.115340.811
5_T47_S0.114310.803
8_S50_Y0.113620.799
13_C47_S0.113410.797
68_D73_K0.113330.797
8_S21_S0.113060.795
21_S44_F0.112740.792
4_L60_C0.112670.792
23_T67_I0.11170.785
36_Y55_N0.111240.782
40_L47_S0.1110.780
21_S53_R0.11080.779
34_E70_S0.110630.778
38_Q77_S0.11060.777
57_Q61_A0.110470.776
18_A62_C0.110120.774
36_Y53_R0.11010.774
16_R38_Q0.109640.771
43_G46_R0.10940.769
24_Y68_D0.109020.766
30_S64_P0.108140.760
31_L37_Q0.108070.760
60_C70_S0.107920.759
72_F80_R0.107840.758
60_C73_K0.107720.757
56_C61_A0.107670.757
19_R22_Y0.107030.752
28_S42_R0.107020.752
38_Q41_D0.106760.750
3_G20_S0.106430.748
48_G53_R0.106080.746
19_R32_S0.105860.744
50_Y76_K0.105080.739
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3k1lB0.337517.20.906
4dduA0.98757.10.92
2ygrA0.9756.80.92
2r6fA0.9756.20.922
1lv4A0.32560.922
1d2vC0.3254.50.927
3zmsC0.61254.40.927
2fiyA0.73.80.929
3n40P0.8753.10.932
3w6wA0.962530.932
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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