GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
HK97-gp10_like - Bacteriophage HK97-gp10 putative tail-component
Pfam: PF04883 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Clan: CL0348
Length: 78
Sequences: 958
Seq/Len: 12.28
HH_delta: 0.826 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
26_A63_G0.669583.396
39_V46_R0.555692.818
45_L72_A0.498412.528
49_I67_N0.465862.363
37_A49_I0.461822.342
70_P74_F0.457362.319
30_E34_K0.361691.834
71_Y74_F0.344071.745
22_L63_G0.330851.678
44_H47_R0.326491.656
33_A37_A0.323451.640
48_S67_N0.319811.622
44_H69_A0.3131.587
29_I33_A0.312621.585
33_A49_I0.309991.572
6_Q9_K0.303781.541
45_L75_V0.277721.408
71_Y75_V0.267781.358
27_E51_V0.263471.336
30_E51_V0.259441.316
43_G47_R0.25681.302
38_P45_L0.249741.267
45_L48_S0.243491.235
25_A28_E0.238021.207
29_I65_V0.232271.178
37_A45_L0.214791.089
59_G64_T0.20961.063
16_K20_K0.208471.057
27_E30_E0.206851.049
23_R31_D0.20581.044
14_A17_A0.198291.006
48_S72_A0.195490.991
38_P46_R0.19410.984
22_L26_A0.190050.964
72_A75_V0.189350.960
40_D43_G0.18880.957
21_A25_A0.186450.946
30_E33_A0.18590.943
21_A77_F0.18460.936
18_A61_V0.181320.920
67_N72_A0.180980.918
32_E36_N0.180660.916
23_R51_V0.180220.914
33_A65_V0.179110.908
48_S69_A0.176990.898
57_S62_T0.175060.888
19_K61_V0.171730.871
28_E32_E0.171370.869
11_Q14_A0.169160.858
4_E14_A0.169080.857
26_A51_V0.168520.855
9_K12_D0.168470.854
38_P75_V0.168330.854
4_E8_E0.167640.850
64_T76_E0.167420.849
50_K66_G0.166430.844
17_A24_E0.166130.843
23_R27_E0.161410.819
8_E12_D0.161140.817
12_D60_G0.159720.810
5_R57_S0.157650.800
22_L61_V0.15450.784
41_T44_H0.150840.765
28_E36_N0.1460.740
67_N78_G0.14510.736
10_L73_H0.144260.732
53_K57_S0.143780.729
69_A72_A0.143520.728
21_A60_G0.14350.728
70_P73_H0.142920.725
5_R9_K0.142010.720
45_L71_Y0.141950.720
48_S75_V0.141550.718
37_A46_R0.141040.715
36_N40_D0.141020.715
13_K17_A0.140860.714
11_Q15_E0.139630.708
30_E49_I0.139330.707
14_A21_A0.138440.702
4_E60_G0.13820.701
46_R49_I0.13730.696
45_L49_I0.136830.694
45_L69_A0.136470.692
4_E18_A0.136380.692
44_H71_Y0.136230.691
25_A29_I0.135270.686
44_H48_S0.132180.670
37_A67_N0.132060.670
29_I51_V0.131980.669
36_N76_E0.131450.667
13_K16_K0.131020.664
40_D75_V0.130230.660
24_E58_G0.129540.657
34_K47_R0.128410.651
26_A61_V0.127070.644
6_Q11_Q0.126440.641
5_R28_E0.125820.638
12_D24_E0.123490.626
32_E35_Q0.123180.625
12_D59_G0.123090.624
5_R8_E0.121580.617
53_K58_G0.121150.614
55_K64_T0.121040.614
9_K15_E0.120980.614
31_D74_F0.120820.613
37_A50_K0.120720.612
37_A75_V0.120520.611
9_K51_V0.120370.610
39_V43_G0.120150.609
10_L19_K0.119730.607
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3lnuA0.517.90.826
4hy1A0.5128110.841
2vj4A0.884610.80.842
3psiA0.923110.70.842
3i9v40.92318.90.847
2eqsA0.42318.10.85
1q8kA0.435970.854
3psfA0.92316.90.854
1pvgA0.37186.60.855
3l84A0.79495.80.859
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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