GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
DUF939 - Bacterial protein of unknown function (DUF939)
Pfam: PF06081 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Clan: CL0307
Length: 141
Sequences: 2941
Seq/Len: 20.86
HH_delta: 0.913 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
35_A127_T0.541442.984
105_T109_I0.399622.202
105_T108_H0.385282.123
17_A36_A0.380392.096
13_A36_A0.36732.024
121_L125_L0.347391.914
11_A15_F0.329041.813
106_F109_I0.317451.749
62_A120_A0.316611.745
130_G134_A0.314921.735
28_Y31_F0.308871.702
16_L133_V0.30471.679
18_I22_Q0.29811.643
101_V104_V0.297061.637
17_A32_A0.295841.630
13_A137_V0.291081.604
86_T90_C0.286881.581
55_I128_L0.283931.565
7_T31_F0.282611.557
35_A39_S0.27341.507
51_G135_L0.264731.459
62_A124_V0.259991.433
32_A126_L0.257951.421
57_G61_G0.255261.407
100_I104_V0.249911.377
9_K138_N0.249081.373
101_V105_T0.248931.372
54_R58_T0.247531.364
29_P126_L0.236841.305
18_I33_P0.235351.297
32_A129_I0.230071.268
36_A134_A0.229051.262
35_A123_R0.226891.250
27_Q122_N0.22661.249
20_I129_I0.226271.247
128_L132_G0.222611.227
39_S130_G0.220591.216
30_F33_P0.219991.212
52_L56_L0.216571.193
55_I131_I0.213281.175
54_R127_T0.213171.175
17_A21_A0.212931.173
20_I23_L0.21261.172
58_T123_R0.212331.170
15_F19_L0.211241.164
13_A134_A0.210541.160
9_K47_S0.20621.136
51_G131_I0.202941.118
63_L67_L0.202861.118
57_G123_R0.201771.112
123_R126_L0.20061.105
21_A29_P0.20021.103
48_L51_G0.199681.100
122_N125_L0.198721.095
100_I103_A0.195991.080
31_F58_T0.194931.074
43_T47_S0.194091.070
61_G123_R0.192781.062
17_A33_P0.191511.055
24_L60_I0.191081.053
106_F110_L0.190151.048
62_A66_L0.189491.044
14_A37_I0.189361.043
87_I91_N0.185121.020
97_E101_V0.181791.002
57_G126_L0.181391.000
86_T91_N0.181250.999
20_I24_L0.18040.994
32_A133_V0.180290.993
97_E100_I0.179830.991
68_F72_L0.179770.991
17_A133_V0.176270.971
41_Q47_S0.176010.970
66_L120_A0.175470.967
42_P134_A0.175420.967
13_A133_V0.174640.962
28_Y122_N0.17360.957
31_F39_S0.172790.952
82_A90_C0.172590.951
38_L42_P0.170910.942
40_M134_A0.170810.941
35_A54_R0.169050.932
20_I133_V0.168870.931
87_I90_C0.168360.928
32_A38_L0.168120.926
73_G77_L0.168030.926
98_G101_V0.167780.925
41_Q50_Q0.167520.923
58_T101_V0.167210.921
8_I82_A0.166320.917
101_V107_V0.165840.914
65_A120_A0.165790.914
35_A119_Y0.164420.906
128_L131_I0.164340.906
72_L80_G0.163480.901
76_P79_I0.162830.897
101_V110_L0.16150.890
97_E103_A0.161320.889
40_M57_G0.161290.889
87_I99_I0.161220.888
109_I119_Y0.160790.886
65_A109_I0.160720.886
58_T105_T0.160640.885
26_L127_T0.159640.880
10_T14_A0.159460.879
107_V119_Y0.156960.865
133_V137_V0.156670.863
88_P91_N0.156630.863
37_I41_Q0.15590.859
103_A106_F0.155730.858
32_A51_G0.155640.858
128_L136_L0.15360.846
39_S69_F0.153370.845
87_I94_K0.152280.839
29_P32_A0.151590.835
34_I40_M0.151530.835
86_T106_F0.151080.833
73_G118_S0.150660.830
25_G121_L0.150520.829
71_I84_I0.150470.829
116_S119_Y0.150450.829
49_K128_L0.150240.828
122_N126_L0.149970.826
86_T89_I0.149830.826
59_L129_I0.149710.825
95_L99_I0.149610.824
120_A124_V0.148490.818
59_L124_V0.148370.818
14_A32_A0.148320.817
26_L129_I0.148230.817
31_F123_R0.148040.816
36_A44_V0.14730.812
14_A134_A0.146880.809
97_E105_T0.146220.806
97_E102_A0.145490.802
21_A33_P0.145470.802
19_L23_L0.145320.801
11_A124_V0.144460.796
118_S122_N0.144430.796
96_G100_I0.143230.789
99_I102_A0.143010.788
68_F82_A0.142710.786
16_L137_V0.142390.785
67_L71_I0.142060.783
39_S134_A0.141770.781
11_A84_I0.141530.780
55_I59_L0.141380.779
42_P61_G0.140320.773
67_L70_L0.139220.767
38_L127_T0.138610.764
65_A108_H0.138070.761
7_T125_L0.138010.761
58_T127_T0.137880.760
47_S79_I0.137390.757
18_I46_R0.13690.754
50_Q97_E0.136830.754
69_F120_A0.136730.753
43_T46_R0.136130.750
31_F97_E0.135740.748
19_L129_I0.134760.743
8_I67_L0.134120.739
71_I89_I0.134040.739
78_S81_L0.13360.736
43_T48_L0.133550.736
52_L59_L0.132590.731
50_Q57_G0.132180.728
89_I92_W0.132180.728
118_S132_G0.132050.728
49_K53_N0.131680.726
136_L139_L0.131530.725
124_V128_L0.130810.721
25_G70_L0.130710.720
44_V138_N0.130540.719
31_F127_T0.129950.716
26_L121_L0.129930.716
57_G69_F0.129850.716
27_Q89_I0.129410.713
125_L129_I0.128720.709
14_A133_V0.128710.709
93_L96_G0.128530.708
53_N56_L0.128220.707
59_L117_F0.128170.706
50_Q68_F0.127950.705
53_N127_T0.127840.704
123_R127_T0.127420.702
113_G116_S0.127160.701
74_Y78_S0.127130.701
65_A106_F0.127120.700
45_Y57_G0.126630.698
17_A130_G0.126290.696
71_I77_L0.126260.696
103_A107_V0.126110.695
8_I117_F0.126090.695
131_I135_L0.125620.692
129_I132_G0.125410.691
99_I103_A0.125330.691
79_I90_C0.125170.690
13_A17_A0.124760.687
27_Q103_A0.12460.687
67_L72_L0.124590.687
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
1lnqA0.64549.20.913
2i88A0.41132.70.932
3nd0A0.88652.50.933
4eneA0.87941.60.939
3w9iA0.86521.50.94
4b19A0.21281.40.94
3effK0.60991.40.941
2ls2A0.18441.30.942
3b4rA0.42551.20.943
3pjsK0.74471.20.944
If you are interested in a protein containing this domain,
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