GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
PsiE - Phosphate-starvation-inducible E
Pfam: PF06146 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 69
Sequences: 509
Seq/Len: 7.38
HH_delta: 0.888 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
59_A62_A0.3192.258
35_A40_L0.265721.881
62_A66_A0.255341.807
58_L62_A0.244481.730
30_Y34_I0.244211.729
14_F59_A0.226181.601
9_I38_A0.221281.566
12_E38_A0.217841.542
23_E27_P0.200961.422
32_I40_L0.196421.390
19_I28_V0.186051.317
32_I67_L0.185951.316
39_L43_I0.185881.316
11_I43_I0.172121.218
23_E26_I0.170971.210
16_T31_I0.170611.208
7_L51_Y0.161931.146
42_E47_D0.161511.143
12_E34_I0.160281.135
60_L63_L0.158821.124
5_L11_I0.157821.117
2_G25_R0.157691.116
32_I53_T0.155281.099
50_E65_L0.149721.060
32_I68_G0.148891.054
49_E54_D0.148821.053
4_I13_L0.148451.051
6_L40_L0.148021.048
54_D58_L0.146441.037
16_T33_D0.144341.022
5_L64_I0.143971.019
10_L46_L0.143351.015
39_L61_S0.141130.999
11_I29_R0.140690.996
39_L51_Y0.140450.994
34_I48_Y0.140220.993
23_E58_L0.13940.987
15_R42_E0.138710.982
2_G7_L0.138710.982
8_F31_I0.138160.978
46_L60_L0.136470.966
13_L35_A0.136270.965
38_A61_S0.135880.962
13_L34_I0.135790.961
59_A63_L0.134050.949
37_T44_I0.13390.948
33_D36_I0.133230.943
25_R48_Y0.131470.931
14_F68_G0.130950.927
61_S66_A0.130360.923
16_T20_Y0.128010.906
17_I31_I0.126370.894
49_E55_L0.124340.880
20_Y34_I0.121850.862
26_I31_I0.120920.856
24_H63_L0.12080.855
43_I54_D0.120790.855
9_I12_E0.120750.855
21_L34_I0.119970.849
9_I41_R0.119920.849
38_A42_E0.119580.846
16_T34_I0.119370.845
44_I52_S0.11920.844
44_I51_Y0.11840.838
46_L65_L0.118390.838
37_T68_G0.118310.837
19_I36_I0.116960.828
3_D37_T0.115930.821
51_Y62_A0.115660.819
20_Y26_I0.115540.818
24_H28_V0.11550.818
10_L42_E0.114970.814
18_I66_A0.114450.810
4_I34_I0.114150.808
7_L11_I0.11380.806
27_P33_D0.112780.798
14_F37_T0.112550.797
10_L36_I0.112390.796
49_E52_S0.111990.793
9_I34_I0.11190.792
5_L24_H0.111410.789
38_A46_L0.111330.788
44_I59_A0.111170.787
3_D39_L0.110990.786
58_L64_I0.110560.783
36_I55_L0.11030.781
26_I45_I0.108510.768
22_K49_E0.108350.767
10_L27_P0.108080.765
23_E65_L0.108070.765
32_I35_A0.107930.764
60_L66_A0.107740.763
5_L20_Y0.107690.762
9_I47_D0.107680.762
29_R33_D0.107650.762
26_I67_L0.106410.753
26_I51_Y0.106120.751
5_L67_L0.105510.747
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
2f7lA0.76811.90.888
3j09A11.80.889
2kncA0.40581.70.891
3j08A11.50.894
3qv2A0.33331.20.9
2l8sA0.36231.20.9
4huqS0.66671.10.901
1tuoA0.79710.90.907
3rfuA10.80.91
2cvcA0.34780.70.912
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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