GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
SpoIIIAC - Stage III sporulation protein ACAD protein family
Pfam: PF06686 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 58
Sequences: 452
Seq/Len: 7.79
HH_delta: 0.857 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
20_K25_P0.32832.191
1_E46_K0.295081.969
12_A35_G0.271381.811
44_L56_E0.267411.785
16_A20_K0.263791.761
5_I9_G0.240181.603
38_L42_L0.221171.476
19_L51_F0.215281.437
7_G21_Q0.207441.385
22_A34_A0.205571.372
2_I6_V0.202841.354
5_I39_I0.19671.313
12_A19_L0.195441.304
48_S52_E0.187031.248
11_I20_K0.179361.197
10_I26_E0.176121.175
7_G28_A0.173671.159
35_G54_I0.165891.107
44_L48_S0.164281.096
1_E40_F0.161351.077
36_G57_L0.160161.069
15_L31_I0.156561.045
11_I35_G0.154561.032
20_K54_I0.153241.023
8_I52_E0.152641.019
9_G51_F0.151411.011
34_A39_I0.150831.007
36_G54_I0.148680.992
3_L55_Q0.147810.987
26_E29_S0.146890.980
19_L25_P0.146820.980
6_V15_L0.144660.966
3_L56_E0.143380.957
18_V49_S0.142640.952
9_G53_T0.138410.924
48_S57_L0.138160.922
34_A38_L0.138070.922
22_A27_Y0.13730.916
4_K34_A0.136490.911
21_Q32_S0.135210.902
31_I55_Q0.134890.900
13_A29_S0.134510.898
25_P47_I0.134270.896
47_I51_F0.134150.895
12_A22_A0.133070.888
8_I13_A0.132780.886
3_L16_A0.131830.880
7_G13_A0.131720.879
41_L56_E0.131650.879
14_F39_I0.130580.872
37_I41_L0.130550.871
20_K47_I0.130410.870
11_I44_L0.129730.866
28_A31_I0.127820.853
11_I53_T0.127380.850
14_F21_Q0.126470.844
18_V46_K0.126060.841
16_A53_T0.1260.841
25_P29_S0.124690.832
19_L33_L0.124520.831
4_K14_F0.123570.825
49_S52_E0.121510.811
15_L38_L0.121170.809
44_L53_T0.117190.782
49_S57_L0.115910.774
45_P48_S0.115770.773
15_L40_F0.115360.770
1_E38_L0.115020.768
40_F46_K0.114340.763
9_G37_I0.114130.762
2_I41_L0.1140.761
16_A32_S0.113930.760
12_A49_S0.113850.760
17_L37_I0.113460.757
25_P56_E0.113170.755
11_I34_A0.11260.752
31_I53_T0.111950.747
8_I31_I0.11170.746
2_I51_F0.111520.744
2_I57_L0.111440.744
50_L55_Q0.110.734
37_I57_L0.109670.732
21_Q36_G0.109670.732
20_K56_E0.109430.730
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3ne5A0.98283.10.857
4hzuS0.46552.20.868
4dx5A0.98282.10.868
3w9iA0.98282.10.87
2v50A0.982820.87
3eb7A0.91381.80.874
2kncB0.72411.70.875
4dveA0.44831.60.877
2ksfA0.44831.60.877
3aqpA0.98281.30.882
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