GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
Phage_P2_GpU - Phage P2 GpU
Pfam: PF06995 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 121
Sequences: 764
Seq/Len: 6.31
HH_delta: 0.907 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
52_F108_K0.363262.918
91_T116_K0.314332.525
25_E116_K0.312022.506
14_E96_T0.289272.324
48_S112_T0.273692.199
44_T116_K0.246451.980
18_S94_S0.235711.893
16_Q94_S0.233791.878
50_V110_E0.231891.863
18_S92_S0.217761.749
49_G111_F0.217071.744
35_L89_V0.215461.731
19_S66_R0.213081.712
17_R95_E0.202511.627
90_I115_L0.191421.538
20_S41_G0.190371.529
50_V108_K0.189131.519
92_S114_S0.18631.497
90_I113_L0.182871.469
32_K117_E0.181971.462
23_W89_V0.177471.426
12_F79_I0.172881.389
66_R95_E0.172621.387
17_R43_D0.169851.364
22_R41_G0.169631.363
63_D66_R0.164871.324
21_A69_A0.164311.320
101_D105_N0.163251.311
42_L117_E0.159361.280
22_R27_E0.159111.278
43_D117_E0.158331.272
53_P58_G0.156681.259
35_L42_L0.152991.229
46_T114_S0.145841.172
44_T114_S0.142691.146
28_R34_A0.14231.143
79_I85_L0.141041.133
14_E48_S0.140891.132
68_M75_L0.140891.132
37_F72_G0.140491.129
35_L116_K0.139321.119
52_F79_I0.136551.097
44_T92_S0.134531.081
49_G113_L0.134381.079
68_M74_P0.12571.010
20_S91_T0.125421.007
51_L111_F0.12531.007
24_A38_T0.12461.001
49_G52_F0.123550.992
23_W35_L0.123460.992
21_A37_F0.121030.972
89_V116_K0.120330.967
68_M115_L0.119360.959
39_G75_L0.11880.954
74_P88_W0.118740.954
53_P57_G0.118190.949
19_S43_D0.116970.940
22_R39_G0.116680.937
26_H55_F0.116060.932
12_F100_F0.1160.932
98_S110_E0.114430.919
76_P87_K0.114360.919
18_S44_T0.114120.917
84_V87_K0.113630.913
16_Q96_T0.113510.912
69_A90_I0.112660.905
10_L61_E0.111670.897
20_S116_K0.111350.894
33_P93_I0.111210.893
23_W72_G0.110350.886
100_F106_P0.109730.881
92_S96_T0.109590.880
17_R45_I0.109470.879
93_I111_F0.108960.875
60_K92_S0.10860.872
30_G72_G0.108270.870
9_T12_F0.108060.868
75_L88_W0.108010.868
18_S46_T0.107330.862
73_E89_V0.107120.860
32_K40_P0.106560.856
52_F106_P0.106340.854
15_L45_I0.105950.851
101_D107_R0.105920.851
25_E41_G0.10590.851
90_I93_I0.104990.843
47_L111_F0.104880.842
69_A111_F0.104350.838
54_E80_G0.104120.836
11_T79_I0.10330.830
47_L113_L0.103260.829
26_H118_Y0.10320.829
77_L115_L0.103140.829
20_S94_S0.10270.825
51_L105_N0.10260.824
87_K113_L0.101020.811
16_Q102_P0.099420.799
48_S110_E0.099260.797
64_K112_T0.099090.796
89_V118_Y0.098810.794
67_A70_E0.098450.791
10_L73_E0.09820.789
68_M71_S0.098070.788
77_L111_F0.097910.787
66_R93_I0.097070.780
100_F108_K0.096670.777
24_A27_E0.096640.776
15_L97_Q0.096330.774
71_S81_S0.096220.773
47_L115_L0.096020.771
30_G37_F0.095810.770
19_S95_E0.095740.769
11_T88_W0.095490.767
53_P107_R0.095450.767
99_Y108_K0.09510.764
22_R38_T0.095030.763
53_P65_L0.095020.763
52_F58_G0.094890.762
25_E33_P0.094670.760
45_I88_W0.094440.759
38_T44_T0.09420.757
10_L52_F0.094080.756
15_L65_L0.09390.754
49_G79_I0.093810.754
78_V84_V0.093490.751
65_L90_I0.093360.750
14_E20_S0.092910.746
51_L62_L0.092770.745
65_L93_I0.092710.745
96_T110_E0.092580.744
79_I106_P0.09250.743
44_T91_T0.092010.739
12_F97_Q0.091830.738
77_L80_G0.091460.735
49_G58_G0.091090.732
52_F100_F0.090990.731
37_F89_V0.090920.730
74_P118_Y0.090630.728
19_S114_S0.090590.728
36_Q77_L0.09030.725
49_G82_G0.090190.724
46_T94_S0.090150.724
12_F88_W0.090080.724
11_T74_P0.089840.722
16_Q60_K0.08940.718
79_I98_S0.089180.716
15_L77_L0.088660.712
107_R111_F0.08830.709
47_L108_K0.088040.707
58_G109_I0.088010.707
28_R119_G0.088010.707
32_K42_L0.088010.707
47_L112_T0.087440.702
44_T71_S0.087310.701
63_D83_K0.087180.700
10_L109_I0.087030.699
58_G108_K0.08690.698
16_Q43_D0.086860.698
62_L106_P0.08680.697
16_Q114_S0.086750.697
71_S83_K0.086720.697
12_F17_R0.086480.695
50_V96_T0.086150.692
34_A119_G0.085960.691
33_P41_G0.085670.688
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
4divS0.933915.60.907
3ddyA0.81829.70.915
4aw6A0.61989.30.916
2xwxA0.89267.90.918
1kzlA0.86787.50.919
4hpfA0.33887.20.92
1v54M0.38025.50.924
2hwjA0.70255.50.924
2x8kA0.90914.90.925
3hm8A0.950440.928
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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