GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
BatA - Aerotolerance regulator N-terminal
Pfam: PF07584 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 77
Sequences: 1677
Seq/Len: 21.78
HH_delta: 0.824 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
8_W11_W0.784233.669
10_L75_A0.636682.979
4_F75_A0.624692.923
10_L72_L0.618492.894
13_L68_A0.54382.544
9_Y74_L0.499052.335
6_N76_R0.485882.273
6_N9_Y0.419851.964
4_F10_L0.413681.936
20_I24_Y0.412811.932
73_A77_P0.349051.633
37_S40_L0.342361.602
35_F41_L0.342171.601
67_L71_I0.325221.522
12_L71_I0.315191.475
5_L76_R0.291441.364
55_R58_L0.286481.340
11_W14_L0.271521.270
63_R67_L0.252571.182
59_L63_R0.244391.143
3_S6_N0.235251.101
54_L58_L0.233291.092
13_L71_I0.232831.089
22_I70_L0.229671.075
9_Y12_L0.225851.057
14_L17_P0.21641.013
33_V66_A0.212010.992
25_F28_R0.207150.969
57_H61_L0.205070.960
34_R37_S0.202720.949
9_Y71_I0.202460.947
61_L65_L0.201760.944
67_L73_A0.196150.918
46_P71_I0.192830.902
33_V38_L0.190070.889
27_R56_R0.185430.868
20_I67_L0.181470.849
14_L18_L0.180890.846
16_L68_A0.180580.845
30_R58_L0.179120.838
38_L42_K0.176540.826
26_L29_R0.175240.820
36_S39_R0.174610.817
10_L45_P0.174430.816
21_I24_Y0.173860.813
3_S29_R0.173670.813
16_L71_I0.173440.812
3_S9_Y0.172160.806
23_H57_H0.171920.804
63_R66_A0.170490.798
5_L77_P0.169950.795
54_L60_L0.166560.779
25_F62_L0.166280.778
42_K45_P0.165040.772
42_K46_P0.164840.771
25_F50_S0.164240.768
18_L67_L0.162460.760
3_S40_L0.161890.757
54_L73_A0.161490.756
21_I25_F0.161410.755
64_L67_L0.161210.754
56_R60_L0.160290.750
18_L26_L0.159030.744
17_P26_L0.15830.741
13_L18_L0.15770.738
12_L22_I0.156160.731
10_L13_L0.15610.730
72_L77_P0.153940.720
49_R59_L0.153540.718
34_R62_L0.152020.711
65_L70_L0.151640.710
24_Y66_A0.151590.709
6_N74_L0.151550.709
32_R72_L0.151260.708
31_R54_L0.148140.693
20_I46_P0.145970.683
23_H63_R0.145070.679
59_L67_L0.14420.675
34_R65_L0.144090.674
20_I23_H0.143720.672
12_L50_S0.143610.672
38_L44_L0.143110.670
13_L17_P0.142790.668
23_H26_L0.142530.667
40_L44_L0.142040.665
11_W59_L0.141370.661
4_F72_L0.141270.661
37_S41_L0.140820.659
21_I57_H0.140550.658
54_L62_L0.139550.653
7_P12_L0.138850.650
65_L69_L0.138760.649
18_L55_R0.138360.647
46_P70_L0.137580.644
7_P39_R0.137540.644
28_R44_L0.137310.642
40_L60_L0.137240.642
5_L8_W0.136850.640
31_R69_L0.13630.638
32_R46_P0.135930.636
24_Y47_S0.135430.634
24_Y55_R0.135290.633
8_W13_L0.134170.628
22_I64_L0.13370.626
5_L48_R0.133240.623
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
2wswA0.87018.10.824
4ainA0.87017.60.826
3l1lA0.57146.20.832
2iubA0.38964.50.842
3mk7C0.94814.20.844
4i0uA0.37662.80.856
1rz2A0.41562.60.859
4ev6A0.37662.20.863
2jenA0.337720.866
3owqA0.45451.80.869
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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