GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
UnbV_ASPIC - ASPIC and UnbV
Pfam: PF07593 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 71
Sequences: 544
Seq/Len: 7.66
HH_delta: 0.883 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
10_T46_S0.418112.538
9_V47_V0.402652.444
7_V34_L0.388482.358
16_Q36_F0.358982.179
18_R34_L0.326051.979
12_D41_A0.295171.792
62_V68_L0.291741.771
10_T45_D0.289241.756
8_T48_E0.26761.625
6_R17_T0.260121.579
24_G28_S0.250521.521
20_V34_L0.245061.488
24_G29_Q0.240251.458
38_L64_A0.23591.432
8_T50_R0.235781.431
49_V70_I0.234511.424
2_A52_P0.232861.414
6_R19_E0.227821.383
2_A57_Q0.224221.361
12_D40_D0.213271.295
8_T15_T0.206571.254
11_A14_R0.201641.224
48_E58_T0.192591.169
12_D45_D0.191681.164
35_H38_L0.188771.146
29_Q32_P0.187941.141
59_L70_I0.185241.125
8_T17_T0.182661.109
53_D57_Q0.181611.103
25_G30_S0.174771.061
2_A20_V0.17291.050
15_T40_D0.170831.037
15_T42_T0.166511.011
14_R41_A0.166241.009
27_L31_E0.162230.985
60_E63_A0.162050.984
10_T48_E0.161880.983
22_S29_Q0.160590.975
7_V49_V0.159320.967
24_G30_S0.156530.950
1_D23_G0.155490.944
7_V47_V0.15490.940
43_S47_V0.153720.933
6_R50_R0.15320.930
21_T30_S0.152410.925
20_V24_G0.149930.910
26_Y31_E0.149510.908
23_G29_Q0.14820.900
48_E56_V0.146610.890
21_T25_G0.146260.888
23_G30_S0.145450.883
59_L62_V0.14380.873
11_A41_A0.139920.849
16_Q51_W0.13880.843
9_V38_L0.138460.841
61_N69_T0.136720.830
10_T15_T0.135820.825
63_A66_Q0.134870.819
50_R54_G0.134660.817
50_R56_V0.133320.809
19_E33_R0.131540.799
11_A56_V0.128260.779
3_I20_V0.128170.778
67_T70_I0.128030.777
24_G27_L0.12770.775
6_R16_Q0.126870.770
11_A16_Q0.12670.769
21_T24_G0.125810.764
44_V47_V0.125520.762
30_S67_T0.124440.755
5_A32_P0.124370.755
6_R33_R0.124280.754
20_V25_G0.124260.754
31_E67_T0.124010.753
25_G29_Q0.123220.748
37_G65_N0.122310.743
46_S50_R0.122160.742
34_L42_T0.121980.741
1_D32_P0.120320.730
25_G28_S0.117220.712
46_S55_K0.115570.702
47_V62_V0.114350.694
8_T40_D0.113730.690
2_A25_G0.113420.689
26_Y54_G0.113310.688
5_A13_G0.113110.687
19_E25_G0.113050.686
52_P68_L0.111820.679
39_G64_A0.11070.672
21_T28_S0.110210.669
18_R30_S0.109380.664
18_R35_H0.109080.662
2_A30_S0.108790.660
5_A9_V0.108770.660
44_V64_A0.108730.660
45_D62_V0.108330.658
22_S30_S0.108120.656
25_G32_P0.107170.651
2_A53_D0.107110.650
18_R36_F0.106770.648
17_T56_V0.106180.645
10_T13_G0.10520.639
10_T61_N0.104870.637
40_D46_S0.104210.633
49_V62_V0.104080.632
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3qr8A0.873214.20.883
3ujzA0.985912.60.885
2kzrA0.366211.10.888
4gz9A0.3389.90.89
4dwfA0.43669.40.891
3luuA0.63388.40.894
1v10A0.84517.80.895
3o2gA0.59157.80.895
1hfuA0.84517.20.896
1aozA0.859270.897
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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