GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
FeoB_C - Ferrous iron transport protein B C terminus
Pfam: PF07664 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 54
Sequences: 1493
Seq/Len: 27.65
HH_delta: 0.854 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
45_K49_R0.632492.317
18_L22_K0.624632.288
4_S8_L0.615552.255
16_V20_L0.536041.963
9_G13_A0.496821.820
44_L48_L0.4921.802
18_L21_K0.474621.738
43_R46_N0.446131.634
15_L19_I0.414551.518
48_L52_W0.379411.390
6_Y9_G0.377341.382
47_V51_T0.356791.307
15_L18_L0.355981.304
50_K54_R0.353611.295
46_N50_K0.351131.286
13_A33_I0.336651.233
46_N49_R0.326251.195
8_L11_L0.325011.190
23_T26_K0.324651.189
13_A17_G0.323051.183
1_V4_S0.299391.097
41_M45_K0.298491.093
5_L51_T0.29341.075
49_R52_W0.29041.064
48_L51_T0.287641.054
7_L11_L0.281481.031
2_L34_M0.279981.025
34_M40_R0.279771.025
46_N53_N0.268970.985
21_K34_M0.263980.967
6_Y10_I0.262970.963
23_T47_V0.260210.953
7_L26_K0.258630.947
20_L24_I0.257570.943
4_S20_L0.254260.931
5_L12_V0.250380.917
40_R54_R0.250140.916
11_L15_L0.247760.907
41_M47_V0.246990.905
23_T27_G0.245580.899
12_V16_V0.234290.858
35_E40_R0.232780.853
3_F7_L0.232620.852
9_G39_Y0.232150.850
46_N54_R0.230030.843
43_R51_T0.228060.835
2_L38_P0.228040.835
6_Y13_A0.220740.809
37_P42_P0.214060.784
41_M44_L0.211940.776
27_G34_M0.210770.772
18_L36_L0.208230.763
6_Y52_W0.206470.756
38_P50_K0.204110.748
31_P34_M0.203850.747
16_V19_I0.203780.746
43_R50_K0.203140.744
2_L17_G0.2030.744
24_I53_N0.20140.738
19_I28_E0.200260.734
19_I25_L0.199380.730
32_F35_E0.198980.729
14_L47_V0.19890.729
21_K25_L0.195650.717
10_I36_L0.19380.710
22_K28_E0.191650.702
8_L12_V0.188220.689
35_E47_V0.187920.688
12_V50_K0.187140.685
11_L22_K0.185380.679
5_L9_G0.184820.677
12_V21_K0.18260.669
31_P48_L0.181750.666
41_M46_N0.180970.663
6_Y21_K0.179050.656
6_Y36_L0.17820.653
25_L30_S0.176590.647
40_R51_T0.17540.642
30_S46_N0.173870.637
44_L49_R0.172740.633
2_L13_A0.171080.627
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
1gaxA0.388970.854
2fiyA0.64816.60.856
3lb6C0.666750.864
2ww8A0.44443.50.873
2p5tB0.38893.40.874
2k21A0.77782.40.882
2ks1B0.51852.30.883
3hd7B0.38892.20.885
1ileA0.42592.10.885
2k1eA0.5372.10.886
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