GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
DoxX - DoxX
Pfam: PF07681 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Clan: CL0131
Length: 85
Sequences: 4404
Seq/Len: 51.81
HH_delta: 0.891 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
58_L68_A1.1792.882
55_G72_L0.929472.272
10_G56_G0.886192.166
13_F72_L0.885892.165
20_K52_E0.792431.937
14_L56_G0.768081.877
57_L61_L0.707371.729
68_A71_V0.654021.599
55_G68_A0.651511.592
17_G56_G0.646871.581
18_L22_F0.638061.559
43_L47_L0.63051.541
13_F76_M0.620891.518
54_V58_L0.619381.514
46_Y50_I0.616351.506
67_L71_V0.606031.481
10_G60_L0.580891.420
21_L49_G0.580151.418
64_F67_L0.57641.409
32_F36_F0.571551.397
17_G53_L0.570071.393
75_F79_A0.566031.383
18_L53_L0.562241.374
32_F35_P0.560291.369
42_G46_Y0.536341.311
25_G28_G0.496061.212
3_L7_I0.491091.200
31_G34_A0.485161.186
26_P49_G0.474861.161
69_A73_A0.471741.153
74_L78_V0.47021.149
47_L51_A0.468681.146
30_A42_G0.466821.141
50_I54_V0.464911.136
76_M79_A0.463211.132
3_L62_G0.456251.115
28_G32_F0.449751.099
11_L15_F0.436271.066
6_R65_T0.430591.052
63_L66_R0.42521.039
29_F32_F0.424341.037
17_G49_G0.42041.028
15_F19_Q0.420261.027
40_P43_L0.409571.001
14_L60_L0.401560.981
38_L44_F0.39560.967
13_F16_H0.390950.956
19_Q22_F0.387590.947
55_G71_V0.383440.937
43_L46_Y0.383120.936
76_M80_T0.380310.930
30_A41_P0.374770.916
26_P46_Y0.370790.906
20_K48_A0.357120.873
12_V15_F0.348670.852
48_A79_A0.348050.851
48_A75_F0.342380.837
30_A34_A0.34070.833
75_F80_T0.336670.823
7_I11_L0.334750.818
8_L11_L0.331610.810
59_L72_L0.328680.803
55_G79_A0.326820.799
64_F68_A0.326430.798
6_R62_G0.324860.794
20_K49_G0.322450.788
51_A75_F0.322160.787
73_A77_L0.321610.786
33_F45_A0.321590.786
27_E30_A0.315650.771
26_P33_F0.312230.763
4_I8_L0.310290.758
33_F36_F0.308670.754
12_V16_H0.302540.739
22_F25_G0.302370.739
26_P30_A0.300290.734
29_F48_A0.298170.729
58_L63_L0.296320.724
29_F34_A0.292850.716
19_Q25_G0.292510.715
58_L71_V0.29050.710
34_A41_P0.290120.709
5_L8_L0.287170.702
63_L67_L0.286680.701
73_A80_T0.285730.698
66_R70_L0.283430.693
29_F45_A0.275130.672
10_G14_L0.275090.672
8_L12_V0.273480.668
36_F52_E0.271770.664
66_R78_V0.271290.663
22_F26_P0.27080.662
21_L53_L0.267630.654
51_A71_V0.266960.652
29_F35_P0.266180.651
9_L59_L0.264550.647
16_H75_F0.26210.641
7_I10_G0.260130.636
44_F48_A0.259720.635
6_R66_R0.257860.630
10_G16_H0.257190.629
65_T69_A0.256690.627
70_L74_L0.254590.622
14_L18_L0.251470.615
48_A78_V0.249940.611
14_L53_L0.249430.610
40_P44_F0.247180.604
66_R69_A0.246570.603
52_E75_F0.24570.601
8_L13_F0.245670.600
9_L27_E0.244490.598
29_F33_F0.24420.597
26_P45_A0.243710.596
33_F38_L0.24350.595
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3ux4A0.85881.60.891
4hkrA0.976510.903
2cjaA0.47060.90.906
3ze3A0.75290.80.907
3rkoJ0.52940.80.908
4ezcA0.98820.80.908
2iubA0.68240.70.912
4he8M0.49410.60.915
2wswA0.94120.50.92
2kdcA0.75290.50.923
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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