GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
FBA_2 - F-box associated
Pfam: PF07735 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 70
Sequences: 1780
Seq/Len: 25.43
HH_delta: 0.852 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
50_N54_K0.830923.541
59_G62_P0.496982.118
35_K65_E0.449961.918
12_N33_N0.421831.798
36_K66_Y0.407171.735
33_N63_R0.383161.633
21_S39_L0.380061.620
55_H60_S0.359561.532
34_C37_I0.346861.478
19_S41_N0.324791.384
44_F48_D0.323571.379
50_N53_L0.32331.378
26_L30_L0.314781.341
51_K55_H0.30551.302
14_E35_K0.301451.285
15_K36_K0.299111.275
14_E63_R0.294771.256
24_I32_M0.294061.253
60_S64_L0.290831.239
52_F60_S0.290551.238
17_S40_W0.288591.230
55_H63_R0.283121.207
21_S42_S0.278271.186
15_K35_K0.269861.150
18_I53_L0.267411.140
29_L52_F0.262951.121
32_M37_I0.257721.098
61_N64_L0.252891.078
17_S68_E0.24461.042
46_N53_L0.240781.026
19_S22_N0.23681.009
19_S40_W0.235551.004
17_S38_E0.221890.946
49_L69_I0.214780.915
37_I59_G0.214760.915
30_L55_H0.21430.913
48_D51_K0.210230.896
57_I61_N0.210110.895
19_S68_E0.210060.895
46_N56_W0.20880.890
26_L51_K0.205960.878
38_E66_Y0.205530.876
36_K68_E0.205170.874
30_L54_K0.205150.874
52_F64_L0.203440.867
27_D30_L0.203340.867
36_K40_W0.202840.864
52_F61_N0.202240.862
25_T28_D0.201350.858
13_L57_I0.199870.852
45_T68_E0.189070.806
50_N57_I0.186850.796
45_T48_D0.186020.793
35_K63_R0.1860.793
19_S43_K0.18590.792
51_K66_Y0.182610.778
43_K47_E0.181920.775
22_N25_T0.181470.773
11_R32_M0.179960.767
23_W28_D0.179070.763
28_D69_I0.177420.756
43_K68_E0.176940.754
33_N52_F0.176560.752
34_C62_P0.175120.746
29_L35_K0.174680.744
14_E36_K0.172850.737
15_K57_I0.172640.736
31_N34_C0.172150.734
23_W47_E0.171370.730
33_N61_N0.167240.713
41_N45_T0.16690.711
27_D40_W0.164280.700
58_N66_Y0.163650.697
34_C42_S0.16350.697
29_L41_N0.163490.697
40_W68_E0.160340.683
39_L67_L0.159910.681
44_F50_N0.159870.681
39_L44_F0.158160.674
36_K53_L0.157320.670
42_S69_I0.156210.666
56_W67_L0.156130.665
13_L34_C0.15560.663
29_L67_L0.155010.661
11_R69_I0.154870.660
11_R16_L0.154790.660
49_L54_K0.154650.659
43_K66_Y0.153640.655
23_W31_N0.15220.649
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
2ra8A110.80.852
4i6jB0.942910.40.853
3bjoA0.35717.90.86
1u5tB15.70.868
2a4hA0.98575.60.868
1sg5A0.61435.60.868
3un9A0.98575.10.871
3e4gA0.91434.80.873
3jxyA0.94294.10.876
3u1uA0.871440.877
If you are interested in a protein containing this domain,
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