GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
DUF1656 - Protein of unknown function (DUF1656)
Pfam: PF07869 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 58
Sequences: 421
Seq/Len: 7.26
HH_delta: 0.865 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
40_V46_F0.346152.192
41_W46_F0.297291.882
42_H45_L0.280191.774
29_R33_R0.261891.658
27_L54_L0.258471.637
51_F55_L0.255641.619
37_Y47_D0.238511.510
31_L36_L0.236651.498
28_R47_D0.22831.446
27_L45_L0.22521.426
12_P16_Y0.224761.423
9_Y53_C0.216461.371
5_I50_L0.208161.318
16_Y28_R0.19341.225
20_A55_L0.190141.204
17_A51_F0.179981.140
46_F49_A0.174831.107
28_R53_C0.173731.100
37_Y42_H0.172561.093
20_A24_T0.167791.062
18_L57_L0.166931.057
10_F38_R0.166671.055
7_G15_V0.16651.054
23_L54_L0.164631.042
41_W45_L0.163711.037
36_L40_V0.162941.032
18_L22_L0.159071.007
9_Y43_P0.158831.006
42_H46_F0.156650.992
17_A28_R0.156350.990
15_V34_L0.15560.985
44_A57_L0.15460.979
16_Y55_L0.154530.978
2_E9_Y0.154420.978
13_L24_T0.152280.964
28_R32_A0.15190.962
19_L29_R0.150430.952
11_P14_L0.147070.931
17_A22_L0.146710.929
48_L52_V0.14640.927
2_E39_F0.145660.922
18_L26_L0.144380.914
40_V48_L0.142730.904
17_A39_F0.141790.898
11_P16_Y0.138650.878
7_G20_A0.138310.876
20_A54_L0.138280.876
5_I31_L0.137810.873
4_S19_L0.135840.860
31_L50_L0.135560.858
26_L34_L0.135460.858
2_E48_L0.134960.855
34_L49_A0.134090.849
22_L26_L0.133660.846
13_L57_L0.133550.846
21_L56_G0.131860.835
30_L34_L0.130450.826
9_Y57_L0.130250.825
43_P47_D0.128720.815
18_L24_T0.12840.813
24_T44_A0.125870.797
27_L46_F0.125840.797
19_L50_L0.125470.794
8_V38_R0.125290.793
22_L48_L0.124880.791
4_S25_L0.12460.789
38_R56_G0.124390.788
35_G50_L0.124290.787
53_C56_G0.124240.787
8_V12_P0.12340.781
3_I14_L0.122640.777
21_L51_F0.120640.764
12_P39_F0.119630.757
4_S43_P0.119230.755
27_L41_W0.117990.747
3_I10_F0.117430.744
18_L56_G0.117220.742
25_L38_R0.115010.728
2_E26_L0.114550.725
5_I30_L0.11430.724
30_L35_G0.113990.722
10_F25_L0.11380.721
46_F52_V0.113230.717
23_L42_H0.111850.708
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
4hytB0.586270.865
2zxeB0.60344.70.876
3ixzB0.67243.50.882
3rhwA12.90.887
3tx3A0.86212.80.887
3rqwA12.40.891
4dveA0.68972.20.894
3nd0A12.10.894
2lkgA0.586220.896
2zuqA0.75861.90.896
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