GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
LGFP - LGFP repeat
Pfam: PF08310 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 54
Sequences: 529
Seq/Len: 9.8
HH_delta: 0.856 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
40_A43_D0.532942.519
8_E17_R0.481052.274
10_A17_R0.454812.150
29_S32_T0.45052.130
27_Y37_V0.427782.022
25_T42_L0.415071.962
20_D25_T0.407831.928
46_A50_G0.3971.877
8_E28_W0.38251.808
44_K48_L0.327261.547
28_W34_A0.314931.489
29_S33_G0.299041.414
5_T20_D0.274581.298
27_Y51_E0.270331.278
38_H41_I0.268791.271
45_W51_E0.268141.268
3_Y7_D0.260981.234
44_K47_A0.258561.222
11_T18_Y0.256611.213
5_T22_Q0.256491.212
23_N31_A0.246891.167
13_D16_G0.242361.146
3_Y22_Q0.229041.083
6_S20_D0.223611.057
1_L24_G0.222631.052
21_F27_Y0.209620.991
19_Q41_I0.20770.982
48_L53_G0.204550.967
6_S19_Q0.203690.963
29_S35_H0.196480.929
18_Y45_W0.195250.923
17_R28_W0.195170.923
32_T35_H0.194940.922
6_S9_Y0.188650.892
17_R52_N0.187830.888
9_Y20_D0.18680.883
40_A44_K0.180470.853
1_L36_A0.173860.822
11_T17_R0.173840.822
16_G35_H0.17160.811
9_Y43_D0.17130.810
46_A51_E0.166350.786
3_Y35_H0.16560.783
26_I34_A0.16460.778
9_Y18_Y0.163340.772
42_L52_N0.161220.762
24_G47_A0.160810.760
7_D42_L0.160130.757
16_G28_W0.159920.756
49_G52_N0.159290.753
12_P52_N0.159210.753
27_Y45_W0.158680.750
25_T46_A0.155140.733
12_P18_Y0.152470.721
39_G42_L0.148560.702
1_L23_N0.147990.700
36_A44_K0.147720.698
30_P34_A0.1450.685
26_I45_W0.14270.675
16_G19_Q0.141530.669
11_T52_N0.140180.663
20_D42_L0.138940.657
30_P44_K0.138140.653
4_P45_W0.137540.650
23_N48_L0.135190.639
10_A31_A0.132110.625
3_Y19_Q0.131290.621
42_L46_A0.129460.612
11_T48_L0.129210.611
10_A29_S0.12920.611
5_T31_A0.129060.610
25_T50_G0.127660.603
9_Y31_A0.124670.589
27_Y46_A0.122260.578
14_G53_G0.121550.575
2_G39_G0.121270.573
3_Y41_I0.121120.573
23_N26_I0.119790.566
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3i6sA0.851910.60.856
1tdjA0.37048.90.861
1ztdA0.92597.50.865
3izxD0.888960.871
3vjzA0.81485.50.873
2ae0X0.94444.10.88
1eejA0.96340.88
4ee6A0.9633.40.884
1t3bA0.9633.30.885
3lwdA0.4632.70.89
If you are interested in a protein containing this domain,
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