GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
PDR_assoc - Plant PDR ABC transporter associated
Pfam: PF08370 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 65
Sequences: 464
Seq/Len: 7.14
HH_delta: 0.851 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
28_W32_G0.316921.860
59_K62_A0.262621.541
49_L53_Y0.262311.540
14_V24_T0.253721.489
19_S30_W0.240151.410
10_S41_V0.235431.382
11_T50_A0.233691.372
58_G61_Q0.232731.366
15_A52_T0.225361.323
21_G26_S0.220661.295
22_L46_L0.216851.273
19_S26_S0.215061.262
34_G38_G0.213231.252
11_T16_V0.212821.249
26_S46_L0.209731.231
45_I49_L0.207761.219
41_V49_L0.204781.202
37_L48_T0.203641.195
10_S26_S0.197861.161
22_L36_L0.19771.160
39_F43_F0.193551.136
12_L40_I0.191931.127
12_L26_S0.189231.111
36_L44_N0.182191.069
28_W31_I0.181691.066
31_I45_I0.176981.039
50_A54_L0.176911.038
52_T55_N0.174571.025
10_S53_Y0.174341.023
19_S35_A0.173271.017
27_Y31_I0.169830.997
33_V62_A0.165190.970
14_V37_L0.16490.968
40_I58_G0.164090.963
11_T14_V0.163360.959
11_T15_A0.163050.957
33_V55_N0.162470.954
23_F28_W0.161990.951
44_N48_T0.159790.938
25_E28_W0.158960.933
22_L52_T0.158450.930
23_F35_A0.157080.922
17_L22_L0.156570.919
32_G39_F0.155130.911
40_I44_N0.153330.900
15_A40_I0.15210.893
12_L16_V0.151290.888
16_V38_G0.149660.878
35_A47_F0.14930.876
50_A53_Y0.147970.869
30_W39_F0.146650.861
23_F54_L0.146070.857
30_W42_L0.145330.853
16_V30_W0.144460.848
24_T28_W0.1420.833
29_Y44_N0.140220.823
17_L31_I0.139330.818
17_L52_T0.138960.816
46_L55_N0.137720.808
37_L41_V0.137340.806
41_V45_I0.135010.792
11_T60_S0.134010.787
27_Y55_N0.13230.777
13_G47_F0.132280.776
35_A39_F0.132040.775
14_V52_T0.131490.772
25_E37_L0.130450.766
27_Y33_V0.129880.762
31_I42_L0.129610.761
45_I52_T0.129610.761
42_L45_I0.12940.760
27_Y46_L0.128850.756
13_G16_V0.12730.747
24_T55_N0.127150.746
54_L59_K0.126220.741
32_G37_L0.125370.736
33_V45_I0.125060.734
10_S24_T0.12250.719
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
1xioA0.584620.80.851
3qapA0.5846190.854
1m0kA0.846213.90.862
4fbzA0.66158.10.875
3ayfA0.87695.30.885
2jafA0.87695.20.885
3ixzB0.84.40.888
3am6A0.661540.89
3eaaA0.43083.60.893
3ug9A0.87693.50.893
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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