GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
FBD - FBD
Pfam: PF08387 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 51
Sequences: 955
Seq/Len: 18.73
HH_delta: 0.831 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
17_K45_K0.608793.076
19_V37_I0.461082.330
26_G30_E0.389011.965
19_V47_M0.36351.837
32_E37_I0.302861.530
38_L45_K0.261831.323
25_R30_E0.248671.256
11_C14_S0.227661.150
25_R33_F0.226521.144
41_A46_K0.225841.141
24_F31_L0.225341.139
8_V11_C0.225041.137
10_E27_E0.224321.133
34_A47_M0.222941.126
30_E34_A0.222771.126
10_E30_E0.222421.124
28_E34_A0.214781.085
20_E49_I0.211081.066
21_I33_F0.20771.049
10_E50_S0.203991.031
16_L38_L0.202831.025
39_E42_P0.198461.003
13_L42_P0.19450.983
21_I34_A0.194480.983
7_S29_N0.193540.978
23_G32_E0.192990.975
25_R29_N0.188440.952
28_E43_V0.187650.948
24_F49_I0.186850.944
36_Y42_P0.182560.922
34_A49_I0.179280.906
14_S40_N0.175160.885
11_C35_K0.174640.882
17_K39_E0.17390.879
29_N32_E0.171150.865
19_V43_V0.169060.854
15_H47_M0.168410.851
17_K31_L0.16830.850
12_L24_F0.166890.843
22_K25_R0.165840.838
13_L24_F0.165210.835
34_A40_N0.164890.833
6_S21_I0.164670.832
15_H41_A0.164150.829
41_A50_S0.161710.817
18_F27_E0.161530.816
18_F48_T0.160460.811
10_E25_R0.159140.804
11_C36_Y0.159070.804
13_L39_E0.157470.796
6_S28_E0.156090.789
36_Y40_N0.155210.784
6_S45_K0.155120.784
34_A50_S0.155120.784
20_E48_T0.154190.779
14_S25_R0.1530.773
32_E45_K0.151640.766
20_E45_K0.151210.764
29_N47_M0.150320.759
40_N44_L0.150180.759
14_S39_E0.14860.751
23_G50_S0.148480.750
33_F43_V0.147480.745
37_I44_L0.14740.745
15_H33_F0.147180.744
14_S26_G0.146820.742
17_K20_E0.146570.741
10_E46_K0.145040.733
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
4i99A0.76477.40.831
1vsy40.96086.50.835
3ts3A0.39225.20.842
2ra8A0.980450.842
3zgxA0.74514.90.843
4i6jB0.960840.849
3ojcA13.70.851
3un9A13.30.855
3iwfA0.78433.20.856
3ogkB13.10.857
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

Page generated in 0.039 seconds.