GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
TRAM1 - TRAM1-like protein
Pfam: PF08390 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 65
Sequences: 318
Seq/Len: 4.89
HH_delta: 0.897 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
10_Y25_G0.451313.070
4_K27_D0.371732.529
27_D30_Y0.323232.199
46_L51_L0.2711.844
46_L50_V0.236421.608
8_L38_V0.21481.461
10_Y23_G0.205751.400
33_F37_I0.202891.380
39_F55_A0.201791.373
40_T47_M0.187131.273
54_L57_K0.184671.256
54_L58_L0.182831.244
10_Y19_T0.181391.234
29_L32_V0.178781.216
44_A47_M0.177411.207
24_K31_F0.173771.182
37_I54_L0.172621.174
31_F37_I0.172021.170
17_P20_G0.170751.162
2_T44_A0.16821.144
8_L22_Y0.167951.143
9_S23_G0.166951.136
6_I10_Y0.163131.110
26_W54_L0.160791.094
5_F62_K0.157131.069
24_K44_A0.153941.047
49_Y62_K0.152261.036
32_V42_L0.151711.032
3_S36_I0.149621.018
42_L64_K0.149081.014
56_R63_K0.148161.008
46_L60_I0.146981.000
41_F45_F0.146170.994
32_V36_I0.14360.977
3_S45_F0.143220.974
3_S7_F0.140.952
51_L54_L0.139830.951
9_S31_F0.139720.950
24_K39_F0.139170.947
35_Y48_E0.138860.945
12_V42_L0.138670.943
12_V20_G0.137250.934
2_T11_N0.136590.929
2_T40_T0.135060.919
24_K41_F0.134580.915
26_W29_L0.133280.907
61_S64_K0.132360.900
34_F47_M0.132240.900
31_F53_P0.132220.899
53_P59_G0.1320.898
25_G44_A0.129950.884
8_L39_F0.125740.855
34_F44_A0.125310.852
49_Y56_R0.1250.850
12_V41_F0.124090.844
29_L33_F0.124020.844
18_G50_V0.12360.841
27_D49_Y0.122290.832
31_F43_R0.120430.819
43_R53_P0.119480.813
44_A48_E0.118480.806
2_T52_D0.117970.803
19_T42_L0.117540.800
60_I63_K0.116270.791
18_G56_R0.114470.779
27_D51_L0.114260.777
40_T44_A0.113850.774
47_M53_P0.112040.762
29_L36_I0.111870.761
50_V57_K0.110690.753
6_I34_F0.109550.745
18_G33_F0.109520.745
40_T57_K0.107890.734
6_I38_V0.107710.733
49_Y64_K0.106930.727
43_R47_M0.106450.724
55_A60_I0.102620.698
12_V36_I0.101650.691
6_I18_G0.101560.691
24_K35_Y0.100930.687
6_I9_S0.099140.674
44_A49_Y0.098670.671
11_N26_W0.097370.662
9_S24_K0.097370.662
21_L54_L0.09680.658
4_K30_Y0.095660.651
3_S26_W0.095450.649
50_V58_L0.094820.645
38_V49_Y0.094720.644
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3l9dA0.53858.30.897
2dn4A0.47693.20.914
2vqxA0.44622.40.919
1awcA0.46152.30.92
1vj7A0.78462.20.92
2dn5A0.47692.20.92
1ci9A0.984620.922
1pueE0.723120.923
4fc8A0.41.70.925
2ed2A0.47691.50.927
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

Page generated in 0.0841 seconds.