GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
SpoIID - Stage II sporulation protein
Pfam: PF08486 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 96
Sequences: 948
Seq/Len: 9.88
HH_delta: 0.905 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
35_E38_K1.014314.766
64_C69_C0.94764.453
21_K83_E0.664843.124
21_K87_D0.528142.482
64_C68_H0.498012.340
84_K88_E0.463042.176
38_K88_E0.432762.033
45_R89_T0.408491.919
20_L86_V0.407391.914
34_E84_K0.395321.858
28_M37_L0.389221.829
46_T50_Y0.38831.825
51_R54_H0.343941.616
12_N74_G0.338631.591
83_E87_D0.321011.508
18_E21_K0.315651.483
42_V92_Q0.310581.459
25_A83_E0.306031.438
17_E91_G0.297111.396
29_P32_W0.294261.383
41_A85_A0.294241.383
26_S73_G0.28931.359
34_E81_K0.283871.334
19_Y23_V0.282251.326
17_E90_R0.279421.313
12_N72_Y0.276531.299
27_E70_Q0.272961.283
34_E85_A0.271591.276
24_L44_A0.270251.270
66_T71_V0.266671.253
34_E88_E0.264391.242
16_L49_Y0.259931.221
21_K86_V0.243761.145
19_Y70_Q0.240571.130
36_A39_A0.231371.087
80_A84_K0.230111.081
36_A40_Q0.225771.061
17_E89_T0.225651.060
14_V72_Y0.225071.058
61_Y65_D0.219561.032
25_A82_I0.218981.029
40_Q44_A0.216041.015
9_T60_G0.214931.010
22_G26_S0.210820.991
21_K78_E0.204270.960
37_L85_A0.202580.952
49_Y93_V0.201330.946
37_L40_Q0.198630.933
20_L44_A0.198010.930
48_A63_L0.19530.918
17_E45_R0.193190.908
37_L82_I0.192150.903
16_L45_R0.191540.900
14_V79_Y0.190660.896
15_P18_E0.189770.892
16_L77_K0.186450.876
24_L82_I0.178440.838
8_L61_Y0.176770.831
24_L41_A0.175110.823
34_E38_K0.174680.821
50_Y53_E0.172480.810
6_G9_T0.172080.809
81_K84_K0.169050.794
46_T81_K0.168610.792
23_V27_E0.165490.778
10_V74_G0.163780.770
44_A70_Q0.162230.762
41_A86_V0.161290.758
56_H69_C0.161230.758
53_E62_D0.160920.756
37_L41_A0.160590.755
32_W81_K0.160390.754
45_R91_G0.159840.751
32_W78_E0.159620.750
24_L40_Q0.158360.744
75_Y78_E0.156370.735
51_R56_H0.156190.734
22_G46_T0.156140.734
28_M36_A0.154790.727
28_M40_Q0.154240.725
80_A87_D0.152790.718
56_H60_G0.151490.712
42_V45_R0.149640.703
78_E83_E0.147580.693
63_L70_Q0.147330.692
32_W47_Y0.147070.691
7_G14_V0.146880.690
11_V62_D0.146230.687
53_E57_S0.146150.687
76_D80_A0.145660.684
27_E47_Y0.144730.680
48_A70_Q0.144620.680
10_V16_L0.143760.675
43_A66_T0.142690.670
30_A82_I0.142460.669
12_N20_L0.141560.665
15_P67_T0.141130.663
88_E94_L0.140610.661
28_M32_W0.140450.660
9_T57_S0.137890.648
30_A79_Y0.137830.648
26_S71_V0.136760.643
85_A89_T0.13520.635
22_G77_K0.134840.634
43_A82_I0.134610.633
20_L48_A0.133650.628
22_G75_Y0.133540.627
11_V30_A0.133490.627
75_Y79_Y0.132290.622
23_V65_D0.131120.616
25_A51_R0.130990.615
87_D90_R0.130660.614
47_Y66_T0.13060.614
67_T71_V0.130150.612
8_L20_L0.129480.608
8_L12_N0.128620.604
23_V70_Q0.128360.603
39_A94_L0.127670.600
76_D87_D0.127530.599
20_L25_A0.125480.590
22_G74_G0.125460.590
47_Y70_Q0.125170.588
51_R68_H0.124640.586
57_S66_T0.123990.583
33_P49_Y0.123940.582
10_V13_E0.123170.579
9_T54_H0.122510.576
53_E60_G0.122280.575
56_H62_D0.121780.572
19_Y48_A0.121230.570
52_M60_G0.121160.569
50_Y93_V0.120960.568
43_A47_Y0.120330.565
44_A47_Y0.120040.564
33_P65_D0.119330.561
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
4f3tA0.927119.90.905
4f1nA113.70.912
4kreA0.916710.80.916
3ihjA0.47926.40.923
3uuwA0.531260.924
1ku1A0.61465.30.926
1j7nA0.958350.927
3i5gC0.34384.90.927
1yueA0.94794.40.929
3so4A0.70834.10.93
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