GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
ATG_C - ATG C terminal domain
Pfam: PF09333 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 98
Sequences: 637
Seq/Len: 6.5
HH_delta: 0.892 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
34_G61_G0.36312.345
20_A73_A0.302681.954
16_G80_G0.291581.883
43_A51_F0.284551.837
38_K41_E0.283041.828
63_V66_P0.27481.774
46_E53_K0.272431.759
35_I62_A0.26561.715
24_L73_A0.259171.674
65_K72_E0.242171.564
47_G50_G0.234181.512
29_Q33_S0.225021.453
38_K57_K0.219141.415
27_G31_G0.215531.392
34_G39_P0.21331.377
59_V63_V0.208761.348
12_D84_Q0.206141.331
76_K80_G0.204561.321
60_P64_V0.200911.297
52_V70_A0.198191.280
80_G83_N0.196351.268
50_G54_G0.191091.234
58_G61_G0.190211.228
56_G60_P0.185631.199
33_S37_A0.184491.191
43_A47_G0.182021.175
68_I75_S0.174191.125
39_P43_A0.171481.107
32_A62_A0.170311.100
59_V86_D0.169451.094
21_Y24_L0.164861.065
15_E19_Q0.163961.059
19_Q24_L0.1631.053
19_Q76_K0.160341.035
21_Y25_G0.160281.035
34_G62_A0.15971.031
17_L77_T0.158391.023
42_G50_G0.157291.016
76_K79_Q0.154710.999
38_K68_I0.153490.991
49_K70_A0.152260.983
77_T81_I0.152050.982
20_A82_R0.151930.981
55_V68_I0.151870.981
12_D79_Q0.150710.973
62_A66_P0.147270.951
78_L83_N0.146550.946
72_E82_R0.145950.942
24_L28_L0.142560.921
72_E76_K0.141760.915
31_G54_G0.140370.906
68_I83_N0.140360.906
54_G61_G0.140330.906
11_K17_L0.140150.905
37_A40_I0.138670.895
68_I71_T0.137820.890
48_V52_V0.136170.879
26_R30_S0.135710.876
40_I44_Q0.135650.876
42_G54_G0.135410.874
14_R84_Q0.1350.872
48_V81_I0.134910.871
31_G58_G0.134530.869
56_G64_V0.132520.856
36_V67_M0.130870.845
16_G83_N0.130860.845
44_Q55_V0.130430.842
31_G34_G0.130020.840
47_G58_G0.128940.833
24_L86_D0.128650.831
50_G53_K0.128130.827
83_N86_D0.1280.827
13_L44_Q0.127720.825
35_I59_V0.127510.823
71_T78_L0.125470.810
56_G59_V0.124780.806
29_Q36_V0.124540.804
36_V41_E0.124220.802
11_K15_E0.123880.800
43_A50_G0.123490.797
10_P83_N0.123360.797
39_P53_K0.122890.794
22_Q30_S0.122510.791
51_F70_A0.122170.789
78_L84_Q0.122010.788
75_S78_L0.121920.787
35_I79_Q0.12160.785
79_Q84_Q0.121320.783
28_L57_K0.121120.782
24_L70_A0.120170.776
37_A68_I0.120150.776
19_Q23_S0.119930.774
36_V46_E0.119770.773
54_G58_G0.119610.772
78_L86_D0.119470.771
23_S68_I0.118930.768
26_R82_R0.117670.760
9_Q60_P0.117040.756
42_G46_E0.116440.752
13_L84_Q0.115540.746
22_Q28_L0.114370.739
49_K52_V0.114160.737
29_Q35_I0.114030.736
25_G66_P0.113780.735
35_I38_K0.113290.732
72_E75_S0.113180.731
10_P15_E0.112820.729
60_P73_A0.112660.727
38_K44_Q0.11240.726
57_K70_A0.111230.718
40_I50_G0.111150.718
31_G42_G0.110540.714
13_L30_S0.110060.711
51_F85_L0.110020.710
52_V59_V0.109820.709
31_G61_G0.108940.703
28_L70_A0.108850.703
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3ktzA0.744918.60.892
1wucA0.704112.90.899
2lckA0.94912.20.9
3ctkA0.70416.30.911
2d5uA0.53065.20.915
3sj6A0.74494.50.917
3eb7A0.74493.50.921
3px8X0.673530.923
2c9kA0.47962.90.924
2j5uA0.3982.50.926
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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