GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
SNARE_assoc - SNARE associated Golgi protein
Pfam: PF09335 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 123
Sequences: 6438
Seq/Len: 52.34
HH_delta: 0.872 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
32_L99_F1.415953.451
98_P101_R1.156492.818
71_F105_A0.953932.325
24_T111_L0.931682.270
28_V107_L0.901442.197
20_F115_I0.90122.196
15_G18_L0.890172.169
20_F118_V0.815711.988
63_E67_Q0.792741.932
32_L103_F0.74651.819
69_Y72_W0.731551.783
71_F101_R0.714191.740
38_G93_G0.71391.740
15_G19_G0.700831.708
36_L40_Y0.693011.689
100_R104_L0.68041.658
99_F103_F0.673581.641
16_P20_F0.651451.588
18_L22_I0.648991.582
75_F108_I0.646871.576
36_L99_F0.641311.563
38_G94_I0.615471.500
51_R54_K0.60261.469
23_A114_T0.600551.464
78_R106_S0.594141.448
72_W76_L0.589421.436
34_A90_Y0.58421.424
39_R96_R0.56511.377
43_R63_E0.560721.366
22_I26_G0.552281.346
35_Y102_F0.534171.302
24_T114_T0.531881.296
77_S88_V0.50821.238
11_G121_G0.506391.234
18_L21_L0.492131.199
105_A109_G0.49031.195
28_V103_F0.486521.186
17_W20_F0.484791.181
79_F112_P0.480971.172
102_F106_S0.480081.170
32_L36_L0.463551.130
31_S106_S0.463051.128
64_R67_Q0.461711.125
7_L11_G0.454961.109
27_A110_K0.448881.094
112_P115_I0.447821.091
35_Y99_F0.443491.081
10_A19_G0.438141.068
17_W21_L0.433721.057
24_T28_V0.432951.055
92_A97_M0.429741.047
85_F110_K0.428271.044
55_R58_R0.427881.043
49_K52_K0.425891.038
20_F24_T0.423091.031
63_E95_T0.422141.029
85_F113_W0.418511.020
16_P119_L0.418481.020
28_V110_K0.412031.004
114_T118_V0.411361.002
110_K113_W0.407140.992
19_G118_V0.406330.990
21_L25_L0.404860.987
66_F70_G0.399930.975
35_Y39_R0.396280.966
78_R110_K0.394980.963
86_D89_N0.393520.959
24_T107_L0.390740.952
103_F107_L0.389240.949
11_G19_G0.388510.947
65_W73_V0.387390.944
74_L105_A0.387230.944
101_R104_L0.385420.939
4_S117_Y0.380550.927
108_I111_L0.377720.920
17_W119_L0.376510.918
10_A14_F0.37320.909
36_L39_R0.371760.906
9_A12_A0.369550.901
34_A89_N0.368790.899
101_R105_A0.367350.895
7_L23_A0.366290.893
23_A118_V0.364950.889
35_Y38_G0.364320.888
50_L53_K0.361210.880
45_R48_R0.360040.877
31_S78_R0.352780.860
110_K114_T0.345660.842
33_L36_L0.34450.840
75_F105_A0.342860.836
71_F97_M0.342720.835
104_L108_I0.339520.827
73_V77_S0.338060.824
106_S110_K0.336380.820
37_L41_F0.332560.810
78_R89_N0.332550.810
42_G45_R0.332530.810
78_R85_F0.331440.808
21_L24_T0.327050.797
55_R87_V0.32620.795
4_S7_L0.324110.790
31_S89_N0.320620.781
40_Y44_R0.319380.778
22_I25_L0.319310.778
30_G34_A0.318290.776
14_F19_G0.318070.775
65_W68_K0.315410.769
20_F119_L0.314140.766
78_R109_G0.313680.764
54_K58_R0.310130.756
64_R68_K0.308620.752
9_A13_L0.305620.745
12_A121_G0.305390.744
66_F92_A0.303510.740
44_R47_R0.297860.726
88_V92_A0.297580.725
16_P118_V0.297450.725
48_R51_R0.296130.722
75_F112_P0.295640.720
4_S85_F0.295370.720
7_L114_T0.294490.718
53_K57_K0.294040.717
104_L107_L0.293930.716
115_I119_L0.293640.716
10_A23_A0.293560.715
71_F104_L0.293020.714
24_T110_K0.292610.713
77_S81_P0.290410.708
100_R103_F0.289870.706
45_R49_K0.2890.704
76_L80_I0.288350.703
49_K53_K0.288340.703
108_I112_P0.287270.700
31_S102_F0.286730.699
42_G46_L0.286360.698
8_I120_L0.28350.691
75_F109_G0.278490.679
44_R48_R0.278050.678
107_L111_L0.277850.677
53_K56_I0.276230.673
42_G47_R0.275450.671
34_A82_G0.275190.671
39_R93_G0.274240.668
89_N106_S0.272080.663
85_F106_S0.272070.663
4_S86_D0.270470.659
47_R51_R0.269740.657
47_R54_K0.268410.654
57_K64_R0.268040.653
77_S92_A0.267330.651
26_G30_G0.265090.646
2_P81_P0.264660.645
11_G118_V0.263610.642
86_D110_K0.260680.635
25_L28_V0.26040.635
79_F85_F0.259760.633
62_I65_W0.259640.633
82_G110_K0.259020.631
47_R50_L0.258640.630
78_R82_G0.258040.629
6_L86_D0.257920.629
29_L33_L0.25590.624
115_I118_V0.255730.623
48_R53_K0.254240.620
5_I13_L0.252930.616
35_Y93_G0.252090.614
42_G93_G0.252010.614
10_A13_L0.251240.612
49_K54_K0.250070.609
77_S109_G0.249490.608
39_R42_G0.248330.605
73_V88_V0.247210.602
98_P103_F0.246940.602
29_L32_L0.24610.600
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
4huqS0.894328.10.872
3w4tA0.422811.80.892
2jlnA0.62610.70.894
1ciiA0.39848.60.898
3tdsE0.44727.30.901
4hzuS0.88626.90.902
3qnqA0.495960.904
1otsA0.50415.60.905
3l1lA0.45535.60.906
2cfqA0.44725.20.907
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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