GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
Phasin_2 - Phasin protein
Pfam: PF09361 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 102
Sequences: 598
Seq/Len: 5.86
HH_delta: 0.843 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
54_A63_L0.23522.218
80_R84_E0.226142.132
33_N78_Y0.21532.030
25_G89_A0.212392.003
32_L78_Y0.207441.956
32_L81_E0.187351.766
50_Q64_Q0.16361.543
95_K98_E0.163331.540
38_R42_E0.150861.422
54_A60_L0.148761.403
29_L82_L0.145751.374
26_A30_A0.145461.371
50_Q59_E0.142051.339
11_N14_A0.135871.281
39_Q68_A0.133511.259
50_Q97_A0.131681.242
62_A73_E0.13021.228
46_A50_Q0.128821.215
9_Q55_K0.128611.213
36_A78_Y0.12481.177
59_E63_L0.124141.170
57_P61_V0.123731.167
91_E95_K0.122911.159
55_K59_E0.122081.151
88_K91_E0.120681.138
12_L68_A0.120431.135
30_A75_L0.120061.132
40_N78_Y0.118591.118
48_A68_A0.116231.096
34_L38_R0.116131.095
88_K92_E0.1161.094
45_F49_Q0.115491.089
4_F94_A0.115081.085
3_Q52_A0.114761.082
32_L36_A0.114711.082
82_L86_A0.114621.081
4_F34_L0.114611.081
8_Q12_L0.113141.067
14_A54_A0.112331.059
79_A99_E0.1121.056
5_S84_E0.111591.052
46_A53_S0.111351.050
22_A38_R0.110561.042
50_Q66_E0.109111.029
37_A76_A0.108551.023
33_N85_I0.108381.022
32_L74_R0.107741.016
78_Y81_E0.106951.008
27_E49_Q0.105150.991
64_Q67_F0.104860.989
22_A71_Q0.104650.987
31_A89_A0.104240.983
32_L85_I0.103680.978
6_E10_K0.103270.974
15_F50_Q0.102690.968
9_Q41_V0.102170.963
90_Q96_P0.101890.961
24_E27_E0.101870.960
56_D59_E0.10140.956
2_E5_S0.101390.956
24_E80_R0.100880.951
21_A24_E0.100730.950
29_L86_A0.100490.947
87_S95_K0.100420.947
73_E95_K0.100410.947
36_A85_I0.100280.945
59_E67_F0.099940.942
46_A51_L0.099850.941
73_E80_R0.09940.937
28_A79_A0.099130.935
9_Q13_E0.099010.934
62_A66_E0.098980.933
86_A90_Q0.098430.928
74_R81_E0.097510.919
43_E71_Q0.097270.917
86_A94_A0.097040.915
23_L98_E0.096970.914
30_A97_A0.096870.913
50_Q88_K0.096420.909
4_F89_A0.096370.909
72_F83_A0.09630.908
69_Q73_E0.096250.907
17_A59_E0.094390.890
56_D96_P0.094150.888
31_A77_S0.093960.886
49_Q95_K0.093940.886
28_A36_A0.093860.885
10_K100_R0.093750.884
55_K98_E0.093010.877
12_L61_V0.092570.873
19_A61_V0.092540.873
93_A96_P0.092480.872
69_Q98_E0.091290.861
38_R77_S0.090990.858
6_E65_S0.090940.857
68_A75_L0.090880.857
24_E28_A0.090830.856
61_V85_I0.090590.854
25_G71_Q0.090490.853
12_L26_A0.09030.851
4_F22_A0.090110.850
11_N45_F0.090070.849
15_F66_E0.089990.848
11_N57_P0.089950.848
17_A22_A0.089760.846
57_P92_E0.089760.846
69_Q82_L0.089730.846
18_L94_A0.089710.846
55_K60_L0.089610.845
36_A75_L0.089170.841
36_A73_E0.089020.839
12_L55_K0.088860.838
35_E78_Y0.088810.837
52_A82_L0.088710.836
36_A40_N0.088630.836
6_E81_E0.088480.834
14_A22_A0.088120.831
43_E77_S0.087930.829
40_N67_F0.087770.828
48_A59_E0.087740.827
33_N96_P0.087540.825
40_N64_Q0.087370.824
13_E16_Q0.087160.822
3_Q9_Q0.086830.819
52_A71_Q0.08680.818
48_A99_E0.086770.818
4_F26_A0.086730.818
81_E89_A0.086590.816
61_V82_L0.086360.814
30_A85_I0.086190.813
59_E88_K0.086050.811
31_A35_E0.085620.807
35_E93_A0.085590.807
43_E74_R0.085560.807
15_F64_Q0.085440.806
70_E80_R0.085430.805
25_G40_N0.085260.804
69_Q83_A0.085050.802
23_L37_A0.084970.801
7_A79_A0.084820.800
31_A76_A0.084820.800
45_F48_A0.08450.797
37_A95_K0.084490.797
75_L82_L0.083890.791
57_P75_L0.083410.786
15_F73_E0.083360.786
22_A82_L0.083130.784
16_Q45_F0.082690.780
46_A99_E0.08250.778
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3ok8A0.990224.60.843
2l7bA115.40.857
2yktA0.9608150.857
3s84A0.9902110.865
3q5dA110.30.866
4idoA19.20.869
2d1lA0.99028.70.871
2zixA0.82358.20.872
2ym9A0.49027.60.874
3nzzA0.490260.879
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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