GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
ATPase_gene1 - Putative F0F1-ATPase subunit (ATPase_gene1)
Pfam: PF09527 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 55
Sequences: 790
Seq/Len: 14.36
HH_delta: 0.806 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
23_W27_W0.722682.973
25_D30_T0.577762.377
19_F23_W0.482971.987
42_G46_G0.466281.918
16_V20_L0.45321.864
24_L28_F0.436451.796
24_L34_F0.393051.617
10_M50_V0.359451.479
23_W26_K0.35821.474
20_L38_G0.319821.316
21_G25_D0.319821.316
47_F51_Y0.312971.288
6_L54_V0.306551.261
6_L53_L0.305141.255
10_M43_I0.302871.246
48_Y52_R0.301641.241
18_F22_Y0.270111.111
18_F39_L0.268751.106
46_G50_V0.260211.071
5_Q9_T0.254881.049
19_F22_Y0.2491.024
6_L39_L0.246381.014
30_T34_F0.245931.012
17_G45_A0.240350.989
8_F12_A0.235790.970
24_L38_G0.23080.950
10_M46_G0.22610.930
40_L44_A0.225350.927
15_L26_K0.223080.918
33_W37_I0.221990.913
15_L19_F0.221290.910
4_S53_L0.220760.908
13_P50_V0.220420.907
3_A32_P0.218730.900
12_A16_V0.216890.892
34_F37_I0.21570.887
39_L47_F0.212850.876
25_D35_T0.212550.874
45_A48_Y0.212510.874
25_D32_P0.209970.864
25_D28_F0.209610.862
14_I20_L0.208620.858
15_L53_L0.208060.856
43_I47_F0.207550.854
4_S7_G0.203250.836
14_I51_Y0.199490.821
3_A43_I0.198690.817
27_W44_A0.1980.815
7_G13_P0.197950.814
14_I37_I0.195230.803
8_F39_L0.194810.801
26_K29_G0.194250.799
38_G47_F0.194140.799
41_L44_A0.193290.795
9_T13_P0.192370.791
38_G49_N0.189180.778
32_P36_L0.186440.767
17_G46_G0.182530.751
36_L45_A0.182410.750
25_D34_F0.180960.744
15_L39_L0.180820.744
12_A19_F0.179640.739
15_L20_L0.17670.727
38_G45_A0.176190.725
46_G49_N0.175550.722
16_V27_W0.175260.721
11_A15_L0.17280.711
14_I46_G0.169380.697
22_Y49_N0.168960.695
13_P45_A0.168850.695
16_V45_A0.168770.694
5_Q17_G0.168150.692
43_I46_G0.167720.690
4_S8_F0.166330.684
12_A49_N0.164160.675
17_G21_G0.161920.666
9_T52_R0.161360.664
47_F50_V0.160850.662
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3kp9A0.654520.20.806
4apsA112.10.824
2xutA111.80.825
3ayfA0.98186.40.843
4h0sA0.47276.40.843
2gfpA0.98184.80.852
4i7zE0.54554.70.853
4ev6A14.50.854
1vf5E0.54554.50.854
2zt9E0.52734.30.855
If you are interested in a protein containing this domain,
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