GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
Porph_ging - Protein of unknown function (Porph_ging)
Pfam: PF09697 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 70
Sequences: 337
Seq/Len: 4.81
HH_delta: 0.913 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
8_K70_E0.946614.325
16_F48_Y0.602172.752
3_I48_Y0.495292.263
10_I15_C0.418711.913
22_F60_K0.411211.879
6_E17_K0.400281.829
21_T43_T0.340631.556
46_A68_I0.334021.526
9_K14_T0.324991.485
41_G59_W0.290841.329
9_K12_G0.286181.308
42_R59_W0.272041.243
41_G60_K0.271241.239
4_T19_T0.268441.227
40_K59_W0.267161.221
15_C69_L0.266221.216
11_G69_L0.26531.212
57_G65_P0.264541.209
22_F40_K0.264081.207
42_R60_K0.259011.184
44_I60_K0.255921.169
56_F62_G0.255031.165
40_K44_I0.254011.161
41_G61_F0.253521.158
2_K19_T0.250021.142
44_I61_F0.245821.123
17_K45_E0.242691.109
49_T69_L0.242471.108
46_A61_F0.240771.100
13_Y69_L0.240281.098
41_G44_I0.233521.067
22_F42_R0.23041.053
63_G68_I0.225121.029
42_R61_F0.210740.963
57_G68_I0.209210.956
13_Y49_T0.208920.955
15_C49_T0.19750.902
16_F50_P0.18880.863
22_F44_I0.187120.855
12_G51_E0.186330.851
44_I59_W0.179090.818
47_W67_L0.177260.810
17_K47_W0.176720.807
10_I67_L0.171830.785
1_W58_P0.171740.785
20_T44_I0.166780.762
10_I63_G0.160950.735
47_W70_E0.158760.725
5_D45_E0.15740.719
13_Y52_I0.157270.719
52_I69_L0.155620.711
58_P65_P0.15370.702
47_W56_F0.150430.687
55_S67_L0.148110.677
22_F41_G0.147420.674
14_T51_E0.146250.668
45_E50_P0.144150.659
14_T62_G0.14280.652
54_V62_G0.141020.644
5_D51_E0.139220.636
49_T52_I0.138280.632
14_T21_T0.137850.630
2_K14_T0.1370.626
22_F59_W0.134990.617
41_G51_E0.133690.611
20_T41_G0.132290.604
46_A58_P0.130430.596
3_I16_F0.128990.589
13_Y51_E0.128920.589
11_G15_C0.127320.582
43_T54_V0.124930.571
58_P68_I0.124790.570
8_K19_T0.124150.567
1_W68_I0.123540.564
16_F41_G0.123270.563
40_K47_W0.121770.556
2_K55_S0.121450.555
13_Y63_G0.121350.554
21_T55_S0.12060.551
11_G53_P0.118780.543
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3tz6A0.77149.10.913
4k61A0.64298.10.915
4fr9A0.64295.40.921
3pzrA0.91435.40.922
3u1wA0.642950.923
2a6zA0.95714.70.924
3j32A0.64294.60.924
3uw3A0.93.60.928
1jetA0.957130.93
3mm5B0.58572.80.931
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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