GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
Unstab_antitox - Putative addiction module component
Pfam: PF09720 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 54
Sequences: 322
Seq/Len: 5.96
HH_delta: 0.818 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
7_R17_S0.631174.060
50_W54_K0.381092.452
2_L10_L0.275971.775
26_E29_W0.265921.711
29_W33_L0.243811.568
32_E36_R0.232191.494
37_L41_E0.231881.492
8_A18_L0.217781.401
40_Y50_W0.216321.392
10_L32_E0.209231.346
32_E35_R0.205941.325
8_A11_A0.205371.321
15_W26_E0.194921.254
2_L14_L0.193681.246
27_A31_E0.18431.186
29_W32_E0.179771.156
29_W43_G0.177391.141
24_E27_A0.176131.133
11_A14_L0.175141.127
11_A17_S0.171331.102
38_A42_S0.171111.101
26_E33_L0.169421.090
7_R11_A0.164381.057
50_W53_V0.160781.034
11_A20_D0.157431.013
35_R39_E0.154160.992
30_K34_E0.152370.980
48_I51_E0.152090.978
5_E23_S0.150080.965
40_Y47_G0.150010.965
30_K54_K0.148890.958
7_R18_L0.148590.956
19_D29_W0.145610.937
15_W33_L0.141830.912
5_E52_E0.139330.896
9_E16_D0.138790.893
14_L46_Q0.138580.891
33_L41_E0.137360.884
15_W29_W0.136330.877
5_E30_K0.135520.872
6_E13_E0.135380.871
15_W24_E0.131850.848
30_K33_L0.131030.843
25_V29_W0.131030.843
1_Q38_A0.130610.840
3_P19_D0.130440.839
11_A19_D0.129510.833
39_E45_V0.126340.813
34_E51_E0.125470.807
33_L54_K0.124830.803
40_Y44_K0.124090.798
48_I53_V0.123910.797
11_A40_Y0.12370.796
4_P22_D0.123640.795
25_V28_W0.123350.793
9_E48_I0.122610.789
11_A23_S0.120710.777
1_Q20_D0.120430.775
24_E53_V0.120290.774
3_P13_E0.117730.757
33_L50_W0.11720.754
1_Q9_E0.116930.752
1_Q23_S0.116060.747
49_P54_K0.11560.744
8_A33_L0.114170.734
9_E13_E0.113970.733
18_L22_D0.113050.727
45_V52_E0.112530.724
34_E46_Q0.111310.716
10_L21_P0.111220.715
4_P36_R0.110370.710
4_P38_A0.109820.706
16_D37_L0.109120.702
2_L36_R0.107790.693
2_L38_A0.10710.689
2_L47_G0.105250.677
9_E39_E0.1050.675
40_Y45_V0.10470.674
41_E44_K0.104620.673
10_L49_P0.103910.668
3_P6_E0.102930.662
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
2x24A0.4259130.818
3r3iA110.70.824
1m7sA110.60.824
4i8pA0.833310.60.824
1qwlA110.40.825
1a4eA0.907410.20.826
2an7A19.90.827
4i9bA0.83339.40.828
2c8sA0.98158.40.832
2isaA18.10.833
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