GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
DUF2065 - Uncharacterized protein conserved in bacteria (DUF2065)
Pfam: PF09838 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 57
Sequences: 344
Seq/Len: 6.04
HH_delta: 0.855 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
4_A7_L0.624623.605
6_G53_L0.447982.586
24_R35_D0.355782.053
17_F46_M0.346492.000
16_P23_W0.330861.910
15_L45_S0.240431.388
44_V48_I0.220151.271
51_V55_L0.219271.266
28_R32_Q0.212241.225
19_A30_L0.209541.209
33_L41_I0.207431.197
4_A24_R0.205121.184
25_R28_R0.203251.173
14_L46_M0.20321.173
47_V55_L0.202871.171
36_R40_R0.197721.141
17_F23_W0.197341.139
25_R29_Q0.191351.104
29_Q37_Q0.190671.101
37_Q40_R0.190111.097
50_L53_L0.189181.092
4_A8_V0.184631.066
18_L22_R0.184551.065
14_L41_I0.182731.055
21_E35_D0.180941.044
10_I16_P0.177621.025
23_W27_L0.177121.022
22_R26_M0.17381.003
24_R38_L0.170210.982
41_I44_V0.169360.978
28_R31_A0.165170.953
27_L31_A0.164890.952
6_G16_P0.164320.948
5_L21_E0.163560.944
15_L23_W0.162540.938
13_G20_P0.162240.936
22_R25_R0.159790.922
38_L42_G0.1590.918
40_R55_L0.155870.900
41_I48_I0.155540.898
12_E20_P0.155150.895
28_R44_V0.153890.888
2_L52_L0.153560.886
15_L30_L0.151150.872
24_R55_L0.148880.859
14_L24_R0.148370.856
32_Q54_W0.146040.843
44_V55_L0.14530.839
17_F53_L0.144850.836
34_P40_R0.141960.819
6_G27_L0.140040.808
16_P53_L0.140030.808
10_I49_G0.139150.803
18_L39_R0.138380.799
48_I54_W0.136560.788
39_R50_L0.136030.785
20_P24_R0.135850.784
10_I21_E0.135720.783
40_R44_V0.134780.778
27_L40_R0.134130.774
40_R47_V0.133730.772
6_G50_L0.133020.768
14_L26_M0.131480.759
3_A9_L0.130840.755
21_E38_L0.130740.755
11_I25_R0.130420.753
27_L33_L0.13030.752
2_L16_P0.129920.750
47_V51_V0.128950.744
5_L56_V0.128690.743
28_R52_L0.128640.742
14_L30_L0.127270.735
9_L45_S0.126230.729
14_L18_L0.125590.725
14_L36_R0.12480.720
12_E39_R0.124520.719
15_L26_M0.124120.716
3_A56_V0.123160.711
6_G43_L0.122930.710
11_I19_A0.122010.704
13_G42_G0.121390.701
17_F52_L0.121290.700
19_A23_W0.120980.698
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
4adyA0.84219.70.855
2e84A0.47375.40.871
1z1nX0.47374.80.873
3j1zP0.84214.60.874
3h90A0.84214.20.876
2cvcA0.47373.80.879
4i0uA0.43863.80.879
3qf4B0.98253.60.88
3qf4A13.60.881
4ev6A0.43863.20.883
If you are interested in a protein containing this domain,
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