GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
bPH_6 - Bacterial PH domain
Pfam: PF10756 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Clan: CL0266
Length: 73
Sequences: 374
Seq/Len: 5.12
HH_delta: 0.872 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
7_D21_R0.249432.015
12_R21_R0.217011.753
4_V51_L0.213441.725
23_P26_E0.210011.697
6_V70_L0.198471.604
53_A58_D0.192871.558
62_L65_A0.189631.532
12_R19_T0.187361.514
18_R64_A0.183051.479
4_V70_L0.178851.445
30_V70_L0.175561.418
31_R48_L0.172411.393
1_R49_V0.169341.368
32_F39_V0.163231.319
40_R48_L0.162591.314
35_G55_Q0.160391.296
4_V41_L0.150721.218
3_R15_N0.150291.214
32_F56_L0.143321.158
30_V41_L0.142161.149
8_P25_S0.141041.140
59_D66_A0.139941.131
46_G49_V0.139131.124
29_G69_R0.138081.116
18_R28_A0.136751.105
2_P42_D0.136641.104
20_R26_E0.136071.099
8_P61_R0.134881.090
44_R47_R0.134021.083
14_R19_T0.132661.072
8_P12_R0.131711.064
37_R63_V0.130231.052
22_V49_V0.128781.041
31_R45_D0.124651.007
11_L26_E0.124631.007
25_S28_A0.124071.002
18_R37_R0.124061.002
9_D21_R0.123751.000
12_R47_R0.123330.996
34_R70_L0.122770.992
33_R40_R0.122470.990
6_V34_R0.121320.980
10_G24_W0.119610.966
8_P17_F0.119260.964
12_R31_R0.118980.961
6_V35_G0.11850.957
62_L66_A0.118280.956
15_N55_Q0.117980.953
7_D12_R0.117790.952
61_R64_A0.117570.950
8_P26_E0.115940.937
59_D69_R0.115750.935
24_W71_R0.114830.928
55_Q58_D0.114750.927
14_R54_V0.114270.923
33_R58_D0.114140.922
48_L63_V0.113920.920
27_I63_V0.110690.894
31_R49_V0.110230.891
43_L47_R0.109030.881
24_W54_V0.107740.871
39_V43_L0.107310.867
40_R58_D0.106420.860
4_V71_R0.105340.851
7_D13_V0.105060.849
42_D45_D0.104820.847
1_R14_R0.104730.846
7_D11_L0.104430.844
22_V46_G0.104290.843
23_P31_R0.104020.840
62_L71_R0.103470.836
10_G71_R0.103310.835
49_V53_A0.10220.826
21_R37_R0.101090.817
36_R56_L0.100490.812
11_L31_R0.099590.805
29_G57_G0.099330.803
37_R55_Q0.099020.800
15_N32_F0.098870.799
18_R26_E0.098160.793
4_V67_L0.09790.791
22_V34_R0.097610.789
20_R28_A0.097410.787
15_N58_D0.097080.784
10_G69_R0.097020.784
40_R53_A0.097010.784
53_A56_L0.095980.775
27_I43_L0.095030.768
7_D22_V0.094820.766
28_A46_G0.094780.766
21_R70_L0.094010.760
3_R67_L0.093730.757
21_R61_R0.093680.757
44_R48_L0.093590.756
5_E44_R0.093130.752
25_S39_V0.091930.743
16_L65_A0.091430.739
15_N35_G0.091230.737
17_F46_G0.091150.736
22_V25_S0.091010.735
14_R51_L0.090870.734
64_A68_R0.089670.725
56_L59_D0.089660.724
30_V49_V0.08960.724
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3pvlA110.50.872
2i1jA0.93159.90.874
1h4rA0.93158.70.877
1ef1A0.93157.10.881
1hymB0.28774.60.89
2zkre0.87673.80.894
1vq8E0.8633.10.899
4khbD0.98632.90.9
3pf7A0.79452.40.904
3f5rA0.98632.20.906
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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