GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
PFO_beta_C - Pyruvate ferredoxin oxidoreductase beta subunit C terminal
Pfam: PF12367 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 67
Sequences: 481
Seq/Len: 7.18
HH_delta: 0.866 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
8_N12_W0.398372.618
2_V10_Y0.344682.265
39_G42_I0.27441.803
6_K28_D0.252341.658
24_H28_D0.250621.647
17_V44_L0.234991.544
55_F58_R0.232971.531
3_T13_Y0.218811.438
5_N9_T0.217631.430
18_Y41_K0.210751.385
18_Y44_L0.206621.358
5_N8_N0.196641.292
29_R33_M0.189241.244
18_Y43_P0.181321.192
5_N13_Y0.177961.170
6_K10_Y0.173781.142
16_R42_I0.171951.130
53_P58_R0.170941.123
3_T11_D0.17061.121
19_K44_L0.165831.090
13_Y16_R0.164591.082
20_L24_H0.163741.076
28_D32_A0.163531.075
4_F14_K0.158351.041
20_L47_F0.157221.033
2_V13_Y0.156481.028
10_Y28_D0.155851.024
2_V9_T0.153751.010
11_D50_N0.147510.969
43_P46_I0.147310.968
11_D15_E0.147150.967
27_S49_R0.146630.964
9_T13_Y0.146240.961
12_W26_P0.145770.958
26_P29_R0.143750.945
55_F59_L0.143660.944
41_K51_E0.14220.935
14_K34_E0.141770.932
41_K47_F0.141080.927
34_E61_E0.140550.924
49_R52_R0.140120.921
16_R39_G0.139390.916
32_A48_Y0.138590.911
25_D28_D0.136260.895
29_R44_L0.133190.875
15_E56_E0.132540.871
49_R53_P0.131920.867
1_C56_E0.131210.862
17_V62_L0.130720.859
58_R61_E0.129940.854
2_V22_E0.12960.852
39_G43_P0.127690.839
27_S33_M0.125920.828
2_V15_E0.125740.826
46_I49_R0.124920.821
54_T57_E0.124190.816
11_D21_D0.123840.814
50_N62_L0.123410.811
34_E41_K0.123110.809
9_T12_W0.122140.803
11_D51_E0.121710.800
21_D57_E0.121360.798
26_P53_P0.121260.797
21_D53_P0.121220.797
24_H47_F0.120460.792
58_R62_L0.120030.789
16_R60_P0.119990.789
12_W42_I0.119130.783
13_Y51_E0.116910.768
21_D48_Y0.116230.764
22_E58_R0.114920.755
14_K29_R0.114160.750
17_V48_Y0.11380.748
24_H29_R0.112590.740
7_I12_W0.110960.729
22_E40_D0.11090.729
11_D47_F0.110460.726
5_N24_H0.109390.719
17_V57_E0.10870.714
29_R52_R0.107790.708
18_Y22_E0.107330.705
29_R56_E0.107030.703
7_I33_M0.106820.702
29_R46_I0.106670.701
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3av4A0.850717.10.866
3eh7A0.80613.10.873
3pq1A0.910412.20.875
3o1fA0.98519.40.88
1h7nA0.82096.50.888
3uemA0.95526.20.889
1pv8A0.82096.20.889
3zf7X0.53735.90.89
4ekzA0.95525.80.89
3j3bX0.53735.50.892
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