GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
BACON - Bacteroidetes-Associated Carbohydrate-binding Often N-terminal
Pfam: PF13004 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 71
Sequences: 556
Seq/Len: 7.83
HH_delta: 0.83 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
22_T41_D0.479123.173
21_I51_A0.41062.720
55_I65_I0.353682.343
52_T64_T0.318082.107
4_V55_I0.284961.887
36_L55_I0.279331.850
48_E68_T0.278741.846
21_I40_V0.268141.776
50_T66_T0.256081.696
21_I67_I0.242431.606
2_I36_L0.203411.347
17_N52_T0.199511.321
2_I65_I0.196751.303
16_E21_I0.193761.283
19_D41_D0.187041.239
50_T68_T0.18131.201
4_V33_S0.177451.175
24_T39_T0.174371.155
10_W36_L0.172741.144
42_P53_I0.17271.144
49_R69_Q0.172361.142
10_W23_V0.171671.137
54_T57_K0.16781.111
25_P38_F0.166741.104
40_V67_I0.160211.061
4_V27_S0.152411.009
46_G70_E0.151581.004
5_T25_P0.150240.995
15_S18_A0.149210.988
46_G59_G0.145160.961
6_S63_K0.144060.954
5_T33_S0.143530.951
52_T70_E0.138850.920
15_S57_K0.137150.908
39_T64_T0.13590.900
10_W38_F0.134850.893
25_P35_T0.133420.884
4_V58_S0.133210.882
18_A51_A0.13240.877
48_E70_E0.130950.867
2_I38_F0.130560.865
57_K60_S0.130270.863
46_G50_T0.128710.852
10_W55_I0.125440.831
16_E66_T0.125030.828
6_S52_T0.125020.828
37_T70_E0.124860.827
10_W14_V0.124080.822
45_S68_T0.123960.821
55_I58_S0.123840.820
7_N58_S0.122420.811
23_V38_F0.122010.808
7_N61_V0.121290.803
40_V55_I0.121060.802
6_S34_G0.120590.799
6_S37_T0.119460.791
11_T57_K0.11940.791
21_I68_T0.11940.791
11_T70_E0.117640.779
21_I38_F0.117460.778
25_P34_G0.116990.775
11_T14_V0.114790.760
6_S58_S0.114160.756
27_S41_D0.11340.751
35_T67_I0.113290.750
2_I14_V0.112610.746
47_E64_T0.110980.735
7_N10_W0.110490.732
39_T48_E0.110340.731
5_T45_S0.110160.730
5_T65_I0.109170.723
3_T17_N0.108880.721
3_T33_S0.108530.719
38_F53_I0.108430.718
6_S15_S0.108380.718
36_L53_I0.108370.718
18_A21_I0.108170.716
43_N60_S0.10770.713
17_N47_E0.107430.712
15_S60_S0.107420.711
48_E63_K0.106560.706
22_T27_S0.105210.697
7_N39_T0.104890.695
26_A39_T0.103890.688
47_E50_T0.103570.686
22_T34_G0.102770.681
53_I63_K0.102470.679
45_S48_E0.101990.676
8_V60_S0.101830.674
2_I44_T0.101350.671
52_T61_V0.100940.669
45_S62_T0.100790.668
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
2vzsA0.957712.40.83
2w47A0.957711.70.831
2w3jA0.94378.30.842
4kmqA0.91558.20.843
2y8kA0.92967.40.845
2w87A0.95777.10.846
4fxtA0.95776.60.848
3ec1A0.63386.10.85
3h2yA0.63385.80.852
1cb8A0.90145.50.854
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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