GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
LZ_Tnp_IS66 - Transposase C of IS166 homeodomain
Pfam: PF13007 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 78
Sequences: 890
Seq/Len: 11.41
HH_delta: 0.841 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
29_Q32_L0.64863.471
69_L73_L0.44432.378
7_L10_L0.434742.327
6_Q11_K0.424052.269
5_E9_L0.311951.669
9_L13_Q0.308621.652
2_Q6_Q0.307891.648
34_E38_A0.285031.525
70_P75_R0.27091.450
69_L75_R0.258281.382
17_R21_K0.252981.354
12_R16_G0.244291.307
10_L14_L0.235681.261
6_Q13_Q0.235121.258
65_G68_P0.231381.238
14_L18_K0.230581.234
34_E37_E0.226311.211
46_E49_A0.219891.177
1_E4_K0.217991.167
13_Q18_K0.212641.138
3_L7_L0.208881.118
8_A11_K0.201631.079
48_E55_V0.20091.075
71_A75_R0.19921.066
7_L11_K0.196411.051
41_A45_A0.194341.040
51_A55_V0.191761.026
12_R17_R0.191181.023
2_Q7_L0.190551.020
33_F36_L0.187311.002
45_A48_E0.187311.002
62_K65_G0.186740.999
41_A55_V0.18610.996
52_D58_R0.182990.979
28_G32_L0.182150.975
45_A50_A0.181780.973
35_E39_E0.179890.963
29_Q33_F0.178960.958
51_A54_T0.177770.951
55_V59_R0.17710.948
11_K15_F0.175980.942
12_R15_F0.173510.929
46_E51_A0.172740.924
30_L33_F0.170990.915
12_R71_A0.169850.909
32_L40_A0.165440.885
3_L12_R0.163380.874
68_P71_A0.163180.873
50_A53_P0.162710.871
37_E40_A0.162480.870
70_P73_L0.16180.866
48_E51_A0.160590.859
10_L13_Q0.160170.857
2_Q13_Q0.160160.857
8_A17_R0.159650.854
4_K22_L0.159410.853
32_L35_E0.159170.852
14_L17_R0.158770.850
68_P75_R0.158590.849
18_K76_E0.158250.847
14_L36_L0.157640.844
7_L18_K0.156430.837
9_L18_K0.156330.837
52_D55_V0.156330.837
5_E19_S0.15560.833
62_K71_A0.154930.829
28_G31_S0.154750.828
5_E11_K0.154440.827
9_L14_L0.153680.822
67_K75_R0.152750.817
73_L77_E0.150930.808
58_R65_G0.150420.805
2_Q9_L0.149910.802
36_L39_E0.149570.800
15_F20_E0.148140.793
31_S47_P0.147550.790
16_G21_K0.145550.779
10_L77_E0.145370.778
48_E52_D0.14520.777
6_Q22_L0.1430.765
16_G32_L0.142040.760
5_E14_L0.141530.757
74_P78_V0.140250.751
62_K70_P0.139310.746
5_E8_A0.138780.743
45_A49_A0.13820.740
37_E62_K0.137270.735
9_L12_R0.137190.734
38_A49_A0.136330.730
8_A12_R0.135960.728
35_E40_A0.135660.726
32_L41_A0.133980.717
33_F64_R0.133260.713
6_Q10_L0.132890.711
61_R64_R0.132510.709
7_L14_L0.132030.707
62_K66_R0.131740.705
2_Q8_A0.131220.702
36_L41_A0.130430.698
14_L76_E0.130420.698
37_E48_E0.129710.694
8_A36_L0.129490.693
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
1f8pA0.205116.80.841
1qbfA0.205116.70.841
2l60A0.205114.20.846
3syjA0.94872.90.885
2es4D0.41032.80.886
2bf9A0.19232.60.889
1bbaA0.19232.40.89
3ctwB0.52.10.893
3tweA0.21792.10.894
2fsfA0.78211.80.897
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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