GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
AsmA_2 - AsmA-like C-terminal region
Pfam: PF13502 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Clan: CL0401
Length: 220
Sequences: 2231
Seq/Len: 10.14
HH_delta: 0.935 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
96_G139_F0.451523.638
47_D77_S0.373653.011
80_G91_S0.348692.810
48_L76_G0.323412.606
167_D170_T0.302452.437
103_G132_F0.291122.346
151_L162_G0.283372.283
54_D57_Q0.258682.084
49_K75_D0.253152.040
54_D71_K0.24631.985
162_G177_G0.240451.938
23_N28_T0.240351.937
138_D150_D0.237931.917
21_S30_S0.237381.913
148_I175_L0.231171.863
145_R167_D0.227441.833
137_G151_L0.222541.793
10_L15_L0.217821.755
100_V103_G0.209191.686
9_R18_D0.209081.685
164_G175_L0.206261.662
14_S36_D0.20321.637
165_T174_D0.202471.632
22_A29_L0.201851.627
174_D211_R0.194091.564
141_I146_L0.191471.543
98_F137_G0.187331.510
7_D18_D0.181981.466
25_F61_A0.180291.453
16_S34_S0.179081.443
28_T51_N0.178541.439
138_D149_D0.177731.432
46_L78_L0.176571.423
145_R165_T0.17451.406
177_G210_F0.174211.404
97_S138_D0.169061.362
44_F80_G0.168691.359
17_L20_L0.16731.348
144_G168_L0.161871.304
178_N209_P0.161511.301
147_R165_T0.161051.298
26_G57_Q0.160081.290
184_S204_G0.156311.260
45_S79_S0.154381.244
166_V216_L0.153141.234
52_N71_K0.151491.221
77_S95_K0.150971.217
215_T219_P0.150641.214
29_L50_L0.149681.206
134_D154_S0.148711.198
72_L100_V0.147971.192
18_D32_S0.147671.190
94_G141_I0.145451.172
45_S77_S0.145371.171
78_L94_G0.14461.165
13_G37_A0.144311.163
130_L155_T0.143731.158
173_L216_L0.143551.157
215_T218_N0.142741.150
5_S21_S0.142491.148
31_G48_L0.142171.146
35_L44_F0.142071.145
51_N73_D0.141741.142
32_S47_D0.141441.140
78_L141_I0.138871.119
50_L53_V0.138121.113
74_L98_F0.137171.105
176_N211_R0.136411.099
146_L208_I0.136031.096
171_Q217_D0.134561.084
79_S93_N0.134231.082
47_D75_D0.132941.071
213_T219_P0.132911.071
174_D213_T0.131451.059
139_F148_I0.130851.054
35_L183_N0.130061.048
164_G174_D0.130031.048
70_G84_S0.129351.042
36_D42_P0.128611.036
132_F150_D0.128511.036
56_G69_S0.128161.033
21_S28_T0.127871.030
9_R16_S0.127351.026
4_V22_A0.127231.025
180_R212_I0.126881.022
166_V175_L0.126841.022
182_P186_N0.126151.017
43_S81_P0.126091.016
142_K147_R0.126011.015
173_L219_P0.125141.008
58_L72_L0.123580.996
140_S149_D0.123220.993
148_I162_G0.123080.992
170_T215_T0.121450.979
166_V215_T0.121150.976
212_I216_L0.121060.976
171_Q216_L0.119580.964
172_T215_T0.119390.962
52_N73_D0.119220.961
93_N143_D0.118830.958
19_N33_G0.118690.956
7_D19_N0.118480.955
70_G100_V0.118430.954
95_K140_S0.117720.949
5_S19_N0.117280.945
96_G141_I0.116740.941
93_N142_K0.116610.940
50_L165_T0.115390.930
167_D171_Q0.11530.929
163_S176_N0.114680.924
75_D97_S0.114380.922
63_G67_P0.113990.919
159_R182_P0.113010.911
27_G70_G0.112460.906
86_E90_N0.112450.906
46_L96_G0.112370.905
102_N156_D0.111990.902
68_L132_F0.111740.900
17_L32_S0.110860.893
11_Q14_S0.109840.885
82_G167_D0.109240.880
6_A100_V0.109070.879
133_D154_S0.108850.877
34_S45_S0.107440.866
85_W166_V0.107230.864
13_G36_D0.1070.862
33_G46_L0.106930.862
161_T207_P0.106810.861
93_N138_D0.106750.860
76_G96_G0.106030.854
142_K165_T0.106030.854
99_S142_K0.105550.851
14_S17_L0.105470.850
59_L149_D0.105320.849
75_D138_D0.104830.845
71_K102_N0.104770.844
133_D205_I0.103650.835
27_G53_V0.103350.833
30_S49_K0.103150.831
36_D179_V0.102850.829
176_N213_T0.102570.827
17_L90_N0.102560.826
150_D175_L0.102420.825
127_G204_G0.102230.824
216_L219_P0.102160.823
179_V210_F0.10180.820
29_L74_L0.101720.820
43_S79_S0.101630.819
175_L212_I0.10150.818
9_R12_D0.101480.818
4_V98_F0.101110.815
135_L151_L0.100370.809
9_R78_L0.100210.808
24_L27_G0.100130.807
10_L37_A0.099470.802
155_T158_L0.099430.801
53_V96_G0.099270.800
183_N210_F0.099150.799
139_F146_L0.099060.798
162_G175_L0.098980.798
20_L33_G0.098860.797
99_S136_S0.098520.794
74_L168_L0.098330.792
35_L152_T0.098080.790
43_S77_S0.098020.790
130_L158_L0.0980.790
20_L144_G0.097980.790
36_D39_G0.097620.787
26_G31_G0.09740.785
22_A31_G0.097170.783
101_R135_L0.096970.781
180_R184_S0.096780.780
160_I179_V0.096430.777
82_G94_G0.09640.777
156_D210_F0.096260.776
148_I151_L0.096120.775
214_G219_P0.096050.774
103_G153_L0.095540.770
80_G94_G0.095430.769
7_D11_Q0.095310.768
125_L129_D0.095310.768
56_G71_K0.09510.766
166_V173_L0.09510.766
150_D161_T0.095050.766
158_L183_N0.094740.763
36_D43_S0.09440.761
96_G140_S0.094290.760
145_R169_D0.094290.760
154_S205_I0.093960.757
39_G81_P0.09390.757
61_A72_L0.093630.754
20_L24_L0.093580.754
62_F125_L0.093360.752
55_L70_G0.093290.752
152_T218_N0.093240.751
4_V96_G0.09320.751
132_F135_L0.09310.750
58_L61_A0.092930.749
125_L128_G0.092330.744
96_G132_F0.091950.741
62_F79_S0.091750.739
5_S165_T0.091730.739
160_I177_G0.091450.737
72_L103_G0.091440.737
52_N101_R0.091070.734
135_L201_K0.090770.731
55_L159_R0.090660.731
35_L84_S0.090020.725
26_G34_S0.08990.724
155_T182_P0.089810.724
70_G102_N0.089510.721
16_S71_K0.089210.719
175_L181_P0.089180.719
29_L55_L0.088890.716
39_G49_K0.08880.716
47_D95_K0.088610.714
104_K129_D0.088520.713
59_L102_N0.088150.710
7_D16_S0.087970.709
57_Q151_L0.087930.709
103_G155_T0.087710.707
130_L181_P0.087650.706
59_L103_G0.087640.706
25_F57_Q0.087630.706
107_G203_S0.08760.706
18_D21_S0.087480.705
96_G100_V0.087250.703
144_G167_D0.087170.702
17_L91_S0.087150.702
82_G85_W0.087040.701
11_Q43_S0.086930.700
56_G72_L0.086840.700
14_S38_D0.086710.699
6_A166_V0.086630.698
47_D154_S0.086630.698
96_G146_L0.086320.696
79_S102_N0.086220.695
94_G144_G0.086140.694
96_G133_D0.085880.692
177_G181_P0.085560.689
12_D71_K0.085440.688
105_L131_K0.085360.688
39_G96_G0.085210.687
12_D19_N0.085080.686
133_D170_T0.085050.685
6_A163_S0.084860.684
75_D168_L0.084730.683
22_A33_G0.084590.682
56_G61_A0.084410.680
167_D172_T0.084410.680
45_S81_P0.084390.680
11_Q98_F0.08420.678
39_G79_S0.084180.678
212_I219_P0.084140.678
43_S140_S0.084050.677
24_L49_K0.084040.677
134_D159_R0.083930.676
29_L73_D0.083890.676
143_D147_R0.083830.676
15_L216_L0.083610.674
158_L162_G0.083550.673
169_D172_T0.083540.673
39_G43_S0.083370.672
50_L74_L0.083340.672
134_D155_T0.083260.671
158_L167_D0.083240.671
105_L128_G0.083070.669
67_P218_N0.083050.669
179_V208_I0.082750.667
20_L30_S0.082710.666
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3jx8A0.48644.20.935
3ounA0.245540.935
4dh2A0.553.20.939
3lycA0.51362.80.94
3petA0.50912.60.941
2ff4A0.29092.30.942
3bkrA0.41822.30.943
3uv1A0.73642.30.943
3ljyA0.51362.30.943
3e8tA0.79091.90.945
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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