GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
FUSC_2 - Fusaric acid resistance protein-like
Pfam: PF13515 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Clan: CL0307
Length: 128
Sequences: 2895
Seq/Len: 22.62
HH_delta: 0.917 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
20_T118_V0.560643.065
43_T90_T0.396812.169
13_H16_W0.387912.121
121_G125_A0.377882.066
35_R82_Y0.360931.973
112_L116_L0.353671.934
47_V111_A0.3271.788
36_A126_L0.323231.767
47_V115_I0.296151.619
20_T24_V0.286061.564
17_A117_D0.28251.545
5_I124_I0.282071.542
43_T86_Q0.277711.518
40_I119_L0.27761.518
5_I9_L0.265311.451
5_I120_I0.260921.427
6_A14_G0.256841.404
45_I87_I0.255371.396
39_R82_Y0.250831.371
37_I41_L0.248631.359
39_R118_V0.247591.354
25_L125_A0.245821.344
113_E116_L0.240141.313
24_V121_G0.239611.310
66_I70_L0.233711.278
17_A124_I0.230251.259
17_A120_I0.229141.253
14_G17_A0.228451.249
5_I8_W0.226271.237
40_I122_I0.22011.203
22_V26_S0.219661.201
16_W82_Y0.218651.195
36_A122_I0.217271.188
94_V111_A0.217081.187
85_A89_I0.215671.179
15_Y18_P0.214221.171
20_T39_R0.213011.165
26_S32_T0.210891.153
14_G117_D0.210461.151
48_V52_L0.208631.141
53_L81_N0.206961.132
52_L56_L0.20531.122
28_S32_T0.205291.122
33_V36_A0.205111.121
109_Q113_E0.20321.111
16_W110_L0.202921.109
50_G94_V0.199171.089
75_F78_L0.19811.083
52_L55_Y0.196791.076
65_L69_L0.196441.074
107_P113_E0.196261.073
119_L123_L0.195891.071
53_L57_F0.195091.067
39_R43_T0.194131.061
21_V29_Y0.192721.054
86_Q89_I0.191691.048
49_L87_I0.190621.042
70_L88_F0.190561.042
42_G46_G0.190471.041
12_P113_E0.190321.041
16_W43_T0.189581.036
47_V51_L0.189231.035
51_L111_A0.186181.018
44_L115_I0.1861.017
13_H113_E0.183871.005
24_V125_A0.183081.001
111_A115_I0.182580.998
9_L45_I0.18230.997
81_N84_I0.180290.986
93_V97_F0.179850.983
71_M74_I0.179640.982
113_E117_D0.177790.972
86_Q90_T0.177640.971
19_I25_L0.176060.963
28_S31_A0.175890.962
26_S35_R0.173790.950
71_M76_Y0.170720.933
11_L112_L0.170160.930
23_S27_P0.169980.929
90_T93_V0.168460.921
71_M75_F0.167240.914
23_S118_V0.167220.914
35_R67_V0.165340.904
70_L74_I0.162390.888
23_S86_Q0.161760.884
42_G117_D0.16070.879
114_R117_D0.160510.878
27_P125_A0.159830.874
34_N38_Q0.159790.874
48_V108_W0.159380.871
22_V93_V0.158730.868
26_S29_Y0.157560.861
21_V124_I0.157260.860
24_V54_L0.156810.857
25_L42_G0.155980.853
11_L118_V0.154350.844
27_P68_F0.15360.840
61_Y65_L0.153550.839
5_I11_L0.152560.834
31_A115_I0.152510.834
10_G37_I0.151860.830
111_A114_R0.151540.829
30_G42_G0.151280.827
28_S33_V0.151110.826
16_W24_V0.150780.824
30_G52_L0.150780.824
41_L83_A0.15070.824
50_G91_V0.150440.822
21_V125_A0.14960.818
35_R53_L0.149220.816
19_I23_S0.148530.812
15_Y22_V0.148110.810
69_L73_L0.147930.809
10_G112_L0.147880.808
88_F91_V0.147550.807
9_L72_F0.147320.805
82_Y85_A0.147180.805
95_L98_S0.147170.805
20_T114_R0.146630.802
42_G114_R0.146460.801
32_T92_M0.146220.799
74_I78_L0.145940.798
27_P46_G0.145790.797
61_Y64_I0.145690.797
43_T114_R0.145460.795
70_L91_V0.144250.789
45_I48_V0.144150.788
106_D109_Q0.143270.783
48_V94_V0.142750.780
33_V83_A0.142370.778
120_I124_I0.142210.778
119_L127_L0.141460.773
71_M97_F0.141390.773
115_I119_L0.141340.773
75_F87_I0.141060.771
55_Y59_G0.140470.768
68_F72_F0.139970.765
53_L56_L0.139640.763
75_F88_F0.139470.763
34_N119_L0.139350.762
30_G66_I0.138980.760
11_L83_A0.138890.759
20_T110_L0.138860.759
35_R85_A0.138790.759
38_Q118_V0.138580.758
85_A88_F0.138370.757
57_F80_K0.13820.756
46_G85_A0.138180.755
35_R42_G0.137930.754
72_F87_I0.137850.754
86_Q117_D0.137760.753
18_P110_L0.137610.752
40_I44_L0.13720.750
98_S115_I0.136890.748
83_A88_F0.136860.748
70_L73_L0.136840.748
38_Q95_L0.136030.744
66_I74_I0.135920.743
37_I40_I0.135680.742
72_F77_F0.135460.741
24_V122_I0.135330.740
92_M110_L0.13520.739
48_V123_L0.135190.739
37_I49_L0.134680.736
54_L107_P0.13460.736
109_Q123_L0.134480.735
72_F76_Y0.134040.733
16_W86_Q0.133780.731
91_V125_A0.133670.731
66_I77_F0.133230.728
28_S74_I0.133190.728
25_L31_A0.132280.723
91_V97_F0.131910.721
7_Q47_V0.131860.721
31_A38_Q0.131370.718
40_I85_A0.131350.718
51_L108_W0.131250.718
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
2i88A0.33592.70.917
4b4sA0.33591.20.931
2ls2A0.20311.20.932
3k3fA0.7510.933
1q90M0.210910.934
3gd8A0.468810.935
2nwlA0.78910.80.937
1lnqA0.67970.80.938
4huqS0.76560.80.938
3klyA0.46880.70.939
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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