GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
MotB_plug - Membrane MotB of proton-channel complex MotAMotB
Pfam: PF13677 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 58
Sequences: 948
Seq/Len: 16.34
HH_delta: 0.853 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
21_Y25_M0.672142.407
31_F34_L0.644562.308
21_Y26_T0.621812.227
20_T29_L0.580042.077
42_D45_K0.505371.810
31_F35_L0.50451.807
29_L33_V0.396781.421
48_E51_Q0.356231.276
52_S56_A0.354471.269
43_K47_E0.353811.267
41_V46_F0.351341.258
40_S44_E0.34951.252
51_Q55_Q0.341581.223
49_V52_S0.333831.195
44_E48_E0.314981.128
27_L33_V0.310581.112
40_S45_K0.307941.103
49_V53_F0.294921.056
43_K48_E0.289961.038
43_K54_Q0.28981.038
37_S52_S0.28691.027
47_E55_Q0.281.003
44_E47_E0.277970.995
25_M31_F0.276210.989
17_W23_D0.275630.987
15_P18_L0.27080.970
19_V30_A0.266120.953
32_F35_L0.263580.944
53_F56_A0.260290.932
18_L37_S0.25930.929
33_V37_S0.258640.926
27_L37_S0.25770.923
20_T24_L0.25280.905
28_L37_S0.250750.898
14_S19_V0.250130.896
16_R20_T0.249990.895
41_V51_Q0.249950.895
39_S57_F0.246140.881
40_S43_K0.244330.875
30_A49_V0.241970.866
50_A57_F0.233810.837
16_R19_V0.231940.831
49_V55_Q0.230870.827
42_D56_A0.23040.825
48_E54_Q0.225760.808
47_E51_Q0.222380.796
18_L26_T0.222180.796
51_Q54_Q0.22140.793
36_F39_S0.219440.786
40_S54_Q0.218170.781
51_Q56_A0.217440.779
42_D47_E0.215180.771
20_T27_L0.21510.770
18_L27_L0.211580.758
11_E14_S0.209140.749
39_S45_K0.208810.748
20_T33_V0.208310.746
35_L38_M0.20790.744
17_W39_S0.205660.736
24_L29_L0.205050.734
50_A55_Q0.204360.732
50_A56_A0.195820.701
16_R24_L0.195790.701
22_A30_A0.189630.679
41_V48_E0.187460.671
38_M48_E0.186930.669
36_F51_Q0.184410.660
19_V24_L0.184280.660
30_A38_M0.182610.654
50_A53_F0.181450.650
19_V22_A0.180530.646
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
2wdqD0.982821.80.853
4hq1A0.689711.30.87
3owqA0.948310.10.872
1u14A0.44837.10.88
3fmtA0.67246.20.883
4av3A0.94835.80.885
3sk7A0.67245.80.885
3mn8A0.60345.60.885
3p09A0.62075.40.886
1j3eA0.67244.80.889
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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