GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
HupE_UreJ_2 - HupE UreJ protein
Pfam: PF13795 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Clan: CL0549
Length: 151
Sequences: 767
Seq/Len: 5.08
HH_delta: 0.935 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
42_T131_E0.254272.271
2_F132_L0.252022.251
40_A94_A0.212081.894
18_F134_Q0.184791.651
68_I104_G0.184361.647
68_I71_S0.181911.625
135_L139_L0.180051.608
136_A140_L0.179311.602
132_L136_A0.177551.586
15_H101_H0.173341.548
16_L137_I0.172241.539
32_K36_K0.165651.480
18_F105_F0.158281.414
71_S100_I0.157151.404
40_A91_W0.156831.401
105_F134_Q0.155611.390
41_F134_Q0.152121.359
49_L131_E0.151531.354
17_L72_I0.149261.333
8_H15_H0.149061.331
63_L66_A0.147091.314
51_L56_I0.146791.311
136_A139_L0.144661.292
19_L134_Q0.144471.290
43_L47_I0.143021.278
65_E68_I0.138161.234
39_T43_L0.13761.229
16_L20_L0.136581.220
9_I105_F0.136561.220
78_E90_R0.135451.210
48_T134_Q0.135371.209
22_L94_A0.134791.204
47_I55_G0.134551.202
12_G71_S0.133861.196
21_A75_V0.13361.193
49_L109_L0.133481.192
86_S141_V0.132951.188
94_A109_L0.132821.186
68_I97_F0.130661.167
11_T108_A0.130411.165
111_E115_P0.130041.162
16_L40_A0.129371.156
2_F125_S0.127961.143
38_V138_V0.126081.126
90_R115_P0.124431.111
9_I133_G0.12431.110
126_F130_V0.124221.110
12_G15_H0.123651.105
8_H12_G0.123611.104
8_H14_D0.123321.102
98_G105_F0.122711.096
98_G134_Q0.122291.092
9_I23_V0.121491.085
41_F98_G0.121331.084
92_L96_G0.120641.078
77_L80_L0.119891.071
14_D101_H0.119511.068
82_R94_A0.1181.054
38_V130_V0.117561.050
6_I106_A0.117461.049
128_L132_L0.117051.046
50_A53_A0.115951.036
20_L135_L0.115921.035
84_K87_A0.114961.027
64_V97_F0.11421.020
18_F41_F0.11391.017
4_L124_L0.113871.017
61_S80_L0.113061.010
69_A122_A0.112261.003
65_E105_F0.111941.000
21_A78_E0.11170.998
71_S97_F0.11170.998
14_D65_E0.111610.997
47_I100_I0.111340.995
7_E11_T0.111130.993
70_L123_L0.111110.992
6_I133_G0.110990.991
105_F108_A0.110720.989
96_G100_I0.110440.987
105_F130_V0.109660.980
6_I49_L0.109450.978
38_V42_T0.109410.977
94_A138_V0.109080.974
22_L41_F0.107930.964
5_G8_H0.107180.957
92_L144_L0.106470.951
115_P122_A0.105630.944
8_H101_H0.105620.943
124_L128_L0.105390.941
18_F131_E0.104760.936
109_L126_F0.10460.934
74_F95_F0.104360.932
82_R87_A0.104160.930
18_F127_N0.104040.929
42_T49_L0.103550.925
59_V103_L0.103480.924
58_S110_K0.103470.924
51_L103_L0.103390.924
4_L7_E0.103270.922
79_N90_R0.103190.922
42_T48_T0.10250.916
80_L92_L0.102460.915
43_L87_A0.102410.915
13_Y79_N0.10220.913
65_E101_H0.102130.912
41_F72_I0.101860.910
51_L123_L0.101640.908
52_A69_A0.101430.906
56_I116_S0.100870.901
30_S144_L0.100690.899
14_D68_I0.100330.896
75_V80_L0.100180.895
84_K89_R0.099950.893
17_L99_L0.099620.890
19_L108_A0.099570.889
11_T126_F0.0990.884
57_V103_L0.098730.882
21_A74_F0.098470.880
48_T95_F0.098430.879
55_G110_K0.098430.879
51_L57_V0.098380.879
109_L123_L0.098010.875
39_T131_E0.096770.864
33_R36_K0.096060.858
17_L57_V0.0960.858
40_A95_F0.095830.856
30_S33_R0.095260.851
130_V133_G0.094970.848
59_V64_V0.094780.847
60_P91_W0.094320.843
35_L140_L0.094070.840
79_N85_R0.093720.837
19_L138_V0.093240.833
64_V76_A0.093080.831
13_Y142_L0.093020.831
61_S95_F0.0930.831
127_N134_Q0.092960.830
97_F105_F0.092910.830
19_L105_F0.092710.828
42_T134_Q0.092710.828
95_F98_G0.092690.828
66_A69_A0.092510.826
39_T135_L0.092350.825
92_L140_L0.091770.820
41_F97_F0.091490.817
40_A43_L0.091480.817
54_L99_L0.091310.816
36_K57_V0.091050.813
51_L106_A0.090540.809
74_F89_R0.090470.808
15_H18_F0.090430.808
10_L86_S0.090250.806
18_F104_G0.089970.804
36_K40_A0.089930.803
37_L79_N0.089920.803
14_D18_F0.089640.801
131_E134_Q0.08960.800
15_H65_E0.089020.795
42_T130_V0.088980.795
140_L144_L0.088960.795
73_A143_P0.088840.794
9_I130_V0.088290.789
7_E142_L0.0880.786
128_L133_G0.087860.785
93_V126_F0.087820.784
35_L49_L0.087770.784
55_G58_S0.087730.784
32_K142_L0.087620.783
74_F88_R0.087150.778
80_L83_P0.087110.778
47_I144_L0.087030.777
4_L126_F0.0870.777
71_S101_H0.086970.777
96_G116_S0.086160.770
8_H18_F0.086010.768
35_L135_L0.0860.768
139_L143_P0.085990.768
104_G126_F0.085680.765
32_K136_A0.085560.764
67_L100_I0.085360.762
59_V139_L0.085340.762
19_L22_L0.085260.762
138_V141_V0.085140.761
32_K94_A0.084920.759
109_L127_N0.084520.755
2_F58_S0.084480.755
138_V142_L0.084480.755
7_E126_F0.084220.752
20_L28_F0.084140.752
109_L134_Q0.084080.751
64_V94_A0.083990.750
130_V134_Q0.083950.750
16_L82_R0.083750.748
55_G69_A0.083530.746
53_A107_S0.083410.745
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
3rlbA0.96036.70.935
2l2tA0.2456.10.936
2ks1B0.25174.60.939
1iijA0.22524.50.94
1tviA0.33773.30.943
2m20A0.19872.90.945
2jwaA0.25171.90.95
2k1kA0.2451.80.95
1zoyC0.33111.70.95
2h88C0.33111.70.951
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