GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
FlgD_ig - FlgD Ig-like domain
Pfam: PF13860 (v26) Consensus Sequence
Clan: CL0159
Length: 81
Sequences: 1070
Seq/Len: 13.21
HH_delta: 0.087 (11Mar13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
33_D37_Q1.099194.713
60_D64_N0.77493.322
32_Y38_V0.65932.827
30_T38_V0.595072.551
32_Y74_S0.505362.167
40_R61_S0.477232.046
59_K65_P0.472242.025
40_R57_D0.459681.971
18_Y47_Q0.437561.876
30_T74_S0.423271.815
30_T76_T0.408931.753
60_D66_V0.408711.752
24_A27_V0.399421.712
29_V75_V0.387511.661
34_A72_T0.337461.447
39_V66_V0.326921.402
16_I31_I0.320031.372
32_Y72_T0.290811.247
35_N38_V0.262531.126
16_I73_F0.255751.097
56_W66_V0.255351.095
18_Y52_H0.234411.005
52_H75_V0.232070.995
27_V77_A0.231980.995
56_W63_G0.230870.990
24_A77_A0.230780.989
47_Q52_H0.227580.976
20_L77_A0.225070.965
15_S53_E0.224660.963
20_L24_A0.221140.948
39_V67_P0.212710.912
31_I73_F0.210190.901
58_G63_G0.210040.901
17_E51_E0.208550.894
31_I56_W0.206470.885
18_Y75_V0.204890.878
28_T76_T0.204860.878
57_D63_G0.200860.861
19_T51_E0.198660.852
46_A49_A0.196380.842
20_L49_A0.19560.839
68_D72_T0.19530.837
20_L52_H0.193330.829
70_T73_F0.192860.827
58_G68_D0.192540.826
70_T74_S0.191360.820
20_L27_V0.188870.810
28_T62_N0.187640.804
48_S52_H0.181450.778
41_T61_S0.180830.775
40_R63_G0.179320.769
38_V74_S0.178770.766
61_S64_N0.178230.764
39_V71_Y0.175060.751
14_G73_F0.174810.749
31_I40_R0.174550.748
30_T41_T0.173770.745
44_L47_Q0.171940.737
20_L50_G0.171340.735
21_P53_E0.164920.707
26_S78_T0.164920.707
23_D49_A0.164810.707
15_S42_I0.163220.700
43_S47_Q0.163080.699
26_S46_A0.160380.688
34_A37_Q0.15920.683
19_T47_Q0.158890.681
34_A68_D0.157210.674
26_S48_S0.153730.659
29_V73_F0.153160.657
40_R53_E0.15010.644
48_S65_P0.149940.643
49_A52_H0.148860.638
34_A55_T0.148430.636
58_G77_A0.148190.635
59_K66_V0.147610.633
25_D77_A0.146230.627
25_D73_F0.146010.626
14_G18_Y0.145890.625
65_P68_D0.144970.622
19_T48_S0.14460.620
17_E53_E0.143760.616
46_A53_E0.142850.612
46_A54_F0.142730.612
40_R59_K0.141760.608
67_P71_Y0.141250.606
15_S51_E0.140330.602
22_E25_D0.139650.599
39_V58_G0.138160.592
57_D70_T0.137440.589
20_L45_G0.135160.579
21_P47_Q0.133890.574
58_G64_N0.133550.573
38_V41_T0.132340.567
63_G71_Y0.132210.567
31_I71_Y0.131540.564
20_L44_L0.130510.560
14_G17_E0.12910.554
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
Top (length/2) GREMLIN results overlayed on top 10 PDB hits:

Legend: The grey circles underneath are pdb residue contacts (min distance < 5 Angstroms). The coloring of these circles is based on HHsearch results which uses the overall probability, per-site alignment prob and agreement of top hits weighted by HHsearch score (Note we only consider monomeric contacts, there might be homo-oligomeric contacts in the pdb that are not shown.)
PDB Cov Prob HH_delta
3osvA0.975399.50.087
3c12A0.96399.40.153
1xf1A1990.295
3isyA0.925992.40.718
3gf8A0.901291.10.728
2hr0A0.938390.70.73
2b39A0.938390.10.733
3cu7A0.925989.90.735
4fxkA0.9383890.739
2pn5A0.950687.70.745

Page generated in 0.0147 seconds.